This run was generated using eTrack version 1.0 performed on 2020-08-30… Thank you for using this pipeline!!


Assembly summary statistics


Field Description
SampleID Name of the sample
TrimReads Total number of reads after quality filtering
MeanReadLen Average read length after quality filtering
Contigs Number of contigs of the draft genome (>200bp)
GenomeLength Length (bp) of the draft genome
LargestContig Length (bp) of the largest contig in the genome
N50 Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly
GC-Content GC content (%) of the draft genome
Depth Number of times each nucleotide position in the draft genome has a read that aligns to that position


SampleID TrimReads MeanReadLen Contigs GenomeLength LargestContig N50 GC-Content Depth
Catt-BWE_048B 230174 169 2240 3715684 11806 2090 51.49 10X
Catt-BWE_054A 304450 155 2462 4118917 17419 2172 50.94 11X
Catt-BWE_113B 311660 162 2273 4247867 27842 2521 50.76 11X
Catt-HIM_031B 164526 165 2995 2563559 4310 913 50.70 10X
Catt-HIM_045B 329330 143 3224 3520313 13526 1258 50.51 13X
Catt-HIM_048B 291558 161 2114 3903224 16987 2403 51.43 12X
Catt-HIM_068A 242972 164 2748 3796931 12856 1680 51.55 10X
Catt-HIM_073A 227696 158 3054 3346460 6620 1272 51.13 10X
Catt-HIM_082A1 298778 163 2396 4267109 13284 2407 51.11 11X
Catt-KAT_009_A1 344352 168 1344 4475396 26936 5163 50.85 12X
Catt-KAT_013A1 239918 167 3023 3487810 10159 1366 51.75 11X
Catt-KAT_036B 90360 167 1226 777772 4764 620 50.33 19X
Home-BWE_054A 341966 163 1789 4542485 21516 3592 51.11 12X
Home-HIM_031A 261270 164 2060 4024124 18944 2607 50.99 10X
Home-HIM_032A 218272 168 2605 3838236 9168 1832 50.87 9X
Home-HIM_045A 479548 142 1520 4254672 24612 4234 50.87 16X
Home-HIM_047B 258442 169 1967 4263045 15928 3108 55.96 10X
Home-HIM_048A 318010 165 1299 4336772 27117 4994 50.96 12X
Home-HIM_068B 250506 161 2738 3788525 9060 1681 50.94 10X
Home-HIM_071A 264128 161 2522 4010382 13352 2100 51.08 10X
Home-HIM_072A 229122 170 2430 3863330 13217 1999 51.41 10X
Home-HIM_073B 274600 165 3133 3997463 12594 1533 50.78 11X
Home-HIM_075A 433206 167 790 4565722 45205 9881 50.98 15X
Home-HIM_82A 275378 172 1845 4425285 24299 3473 51.08 10X
Home-KAT_009A 337726 163 2433 4437467 14004 2489 50.88 12X
Home-KAT_013A 228108 170 2879 3740660 12726 1592 51.14 10X
Home-KAT_023A 321126 158 2630 4020724 14588 1950 51.32 12X
Home-KAT_039B 168914 164 2928 2793862 25204 1032 50.24 9X
Hosp-BWE_048 182824 169 3078 3302835 8241 1225 51.05 9X
Hosp-BWE_054 425850 157 1484 4757167 21565 4755 50.80 14X
Hosp-BWE_076 214110 161 3008 3192002 7609 1205 50.81 10X
Hosp-BWE_106 171380 166 3159 2890869 8594 1005 50.82 9X
Hosp-HIM_031 207346 163 2912 3577483 9055 1470 50.70 9X
Hosp-HIM_045 387642 150 1866 4158817 12843 3117 51.01 13X
Hosp-HIM_048 330554 156 2939 4079520 19766 1687 50.22 12X
Hosp-HIM_068 398734 169 833 4556867 40148 8964 50.71 14X
Hosp-HIM_071A 327566 159 2917 4249416 12074 1830 51.03 12X
Hosp-HIM_82 214874 170 2860 3736242 9583 1563 50.97 9X
Hosp-KAT_009 289630 155 2779 3956709 10531 1789 50.83 11X
Hosp-KAT_013 233622 169 2759 3728264 9258 1688 51.03 10X
Hosp-KAT_023 293682 164 2931 4145128 10214 1759 51.09 11X
Hosp-KAT_039 260886 164 2375 4130433 18456 2290 50.99 10X

Select the parameter

Number of reads
## Warning: `arrange_()` is deprecated as of dplyr 0.7.0.
## Please use `arrange()` instead.
## See vignette('programming') for more help
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_warnings()` to see where this warning was generated.

Average number of reads per sample = 277971

Average read length

Average read length per sample = 163 bp

Number of contigs

Average number of contigs per sample = 2394

Genome length

Average genome length per sample = 3847275 bp

Largest contig length

Average largest contig length per sample = 15857 bp

N50

Average N50 per sample = 2531 bp

GC content

Average GC content per sample = 51.077%

Sequencing depth

Average sequencing depth = 11.214X

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Phylogenetic inference

Phylogenetic inference based on vcf SNPS

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


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Antimicrobial Resistance Profiling


Field Description
Contig Contig name where the gene was found
Start Start position of the gene within the contig
End End position of the gene within the contig
Gene Antibiotic resistance gene
Gaps Gaps in subject (genome) and query (antibiotic resistance gene)
Coverage Proportion (%) of the gene covered
Identity Proportion (%) of exact nucleotide matches
Accession Accesion number of the antibiotic resistance gene
Product Antibiotic resistance gene product
Resistance Antibiotic that the gene confers resistance to


Select the samples and the database

Catt-BWE_048B
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00153 739 1542 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig01204 109 969 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig01222 42 551 dfrA8_1 0/0 100 100.0 U10186 dfrA8 Trimethoprim
contig00153 1603 2418 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00594 740 1945 tet(B)_2 0/0 100 99.9 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00933 197 1354 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00153 739 1542 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig01074 92 911 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00996 681 1372 baeR 0/0 95.7 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00003 7704 9074 cpxA 0/0 99.8 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00490 620 1252 CRP 0/0 100.0 99.5 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01222 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig01021 105 1277 emrA 0/0 100.0 98.3 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00659 705 1037 Escherichia_coli_emrE 0/0 100.0 92.5 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00810 81 494 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00160 27 410 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00186 1236 2393 mdtE 0/0 100.0 99.6 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00503 331 1557 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00134 1897 3129 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00534 359 1390 mdtN 0/0 100.0 98.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00698 54 1520 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00310 945 1421 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig01265 217 1139 pmrF 0/0 95.2 99.3 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00153 1603 2418 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig01204 109 969 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00594 740 1945 tet(B) 0/0 100.0 99.7 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00153 739 1542 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig01204 109 969 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00153 1603 2418 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00594 740 1945 (Tet)tetB 0/0 100 99.6 AB089594:1-1206 (Tet)tetB NA
contig01222 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00153 739 1542 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig01204 109 969 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00153 1603 2418 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00594 740 1945 (Tet)tetB 0/0 100 99.6 AB089594:1-1206 (Tet)tetB NA
contig01222 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00933 197 1354 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00153 739 1566 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig01074 92 911 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00996 681 1372 BAER 0/0 95.7 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00003 7009 7707 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00003 7704 9074 CPXAR 0/0 99.8 99.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00490 620 1252 CRP 0/0 100.0 99.5 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01222 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01021 105 1277 EMRA 0/0 100.0 98.3 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00810 81 494 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00160 27 416 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00160 430 864 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00186 1236 2393 MDTE 0/0 100.0 99.6 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00503 331 1557 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00134 1897 3129 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00534 359 1390 MDTN 0/0 100.0 98.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00698 54 1520 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00310 945 1421 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00659 705 1037 MVRC 0/0 100.0 92.5 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig01265 217 1139 PMRF 0/0 95.2 99.3 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00025 230 1099 ROBA 0/0 100.0 99.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00734 1383 1706 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00153 1603 2418 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00594 740 1945 TETB 0/0 100.0 99.9 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
Catt-BWE_054A
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00329 1 2891 acrB 0/0 91.8 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00676 1136 1798 acrS 0/0 100.0 97.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00955 1 805 bacA 0/0 97.9 96.8 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00107 3712 4433 baeR 0/0 99.9 98.2 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00107 2312 3715 baeS 0/0 100.0 97.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00069 3582 4955 cpxA 0/0 100.0 98.2 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00179 2848 3480 CRP 0/0 100.0 99.7 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00099 2017 3072 emrK 0/0 100.0 98.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01097 478 1008 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00099 479 2017 emrY 0/0 100.0 97.6 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00038 447 2090 eptA 0/0 100.0 98.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00152 2583 3776 Escherichia_coli_acrA 0/0 100.0 98.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00087 942 2075 Escherichia_coli_ampC 0/0 100.0 96.9 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00557 850 1182 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00099 3596 4210 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00103 1549 2277 gadW 0/0 100.0 95.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00103 356 1180 gadX 0/0 100.0 96.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00287 666 1079 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00278 1003 1386 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00251 1077 2231 mdtE 1/3 99.7 98.3 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00371 343 1374 mdtN 0/0 100.0 97.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00170 2048 3016 pmrF 0/0 100.0 98.3 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 942 2075 (Bla)AmpC2_Ecoli 0/0 100 96.9 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00315 839 2740 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00087 942 2075 (Bla)AmpC2_Ecoli 0/0 100 96.9 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00315 839 2740 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00152 2583 3776 ACRA 0/0 100.0 98.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00329 1 2891 ACRB 0/0 91.8 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00676 1136 1798 ACRS 0/0 100.0 97.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00955 1 805 BACA 0/0 97.9 97.0 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00107 3712 4433 BAER 0/0 99.9 98.2 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00107 2312 3715 BAES 0/0 100.0 97.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00087 942 2075 BLAEC 0/0 100.0 97.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00069 2887 3585 CPXAR 0/0 100.0 99.3 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00069 3582 4955 CPXAR 0/0 100.0 98.2 MEG_2119 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00179 2848 3480 CRP 0/0 100.0 99.7 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00021 4410 5600 EMRD 0/0 100.0 98.1 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00099 2017 3180 EMRK 0/0 100.0 98.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01097 478 1008 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00099 479 2017 EMRY 0/0 100.0 97.7 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00038 447 2090 EPTA 0/0 100.0 98.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00103 1549 2277 GADW 0/0 100.0 97.4 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00103 356 1180 GADX 0/0 100.0 96.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00287 666 1079 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00278 997 1386 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00278 548 982 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00251 1077 2231 MDTE 1/3 99.7 98.3 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00995 730 1059 MDTI 0/0 100.0 98.5 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00995 378 743 MDTJ 0/0 100.0 98.6 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00371 343 1374 MDTN 0/0 100.0 97.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00557 850 1182 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00315 839 2740 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00170 2048 3016 PMRF 0/0 100.0 98.3 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00841 699 1568 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
Catt-BWE_113B
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00321 175 3159 acrF 0/0 96.1 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00254 2788 3450 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00783 1026 1845 bacA 0/0 99.8 98.8 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00521 1687 2319 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00290 843 2381 emrB 0/0 100.0 98.5 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig01013 320 1375 emrK 0/0 100.0 98.4 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00537 300 830 emrR 0/0 100.0 99.8 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00035 4331 5524 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00052 1444 2748 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig01428 296 910 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00013 1225 1953 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00013 33 857 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00470 878 1291 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00280 2502 2885 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00125 3296 4543 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00125 174 3296 mdtB 0/0 100.0 98.4 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00013 5454 6611 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00013 2316 5429 mdtF 0/0 100.0 98.5 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00374 972 2198 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00383 1246 2478 mdtM 0/0 100.0 96.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00171 1319 1793 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00466 1479 2645 ugd 0/0 100.0 97.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00522 795 2438 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00052 1444 2748 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00698 249 2058 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 95.2 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
NCBI
## [1] "No antibiotic resitance genes from NCBI database were found"
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00035 4331 5524 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00321 175 3159 ACRF 0/0 96.1 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00254 2788 3450 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00222 1927 3779 ASMA 0/0 100.0 98.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00783 1026 1845 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00061 3007 4197 BCR 0/0 100.0 98.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig01188 224 922 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00521 1687 2319 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00290 843 2381 EMRB 0/0 100.0 98.5 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig01013 320 1483 EMRK 0/0 100.0 98.5 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00537 300 830 EMRR 0/0 100.0 99.8 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00013 1225 1953 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00013 33 857 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00470 878 1291 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00280 2496 2885 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00280 2048 2482 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00125 3296 4543 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00125 174 3296 MDTB 0/0 100.0 98.4 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00013 5454 6611 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00013 2316 5429 MDTF 0/0 100.0 98.5 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00374 972 2198 MDTG 0/0 100.0 99.4 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00405 1992 2321 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00405 2308 2673 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00461 701 2074 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00383 1246 2478 MDTM 0/0 100.0 96.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00171 1319 1793 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00698 249 2058 PBP2 0/0 95.2 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00052 1444 2748 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00928 454 1323 ROBA 0/0 100.0 99.4 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00466 1479 2645 UGD 0/0 100.0 97.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00522 795 2438 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Catt-HIM_031B
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00117 199 1371 emrA 0/0 100 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig01192 8 622 evgA 0/0 100 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
ARG-ANNOT
## [1] "No antibiotic resitance genes from ARG-ANNOT database were found"
NCBI
## [1] "No antibiotic resitance genes from NCBI database were found"
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00533 363 1061 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00117 199 1371 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig01276 412 759 QACEDELTA1 0/0 100.0 100.0 MEG_5829 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACEDELTA1 NA
contig00477 420 1206 ROBA 0/0 90.5 99.5 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
Catt-HIM_045B
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00351 679 1884 tet(B)_1 0/0 100 100 AP000342 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00159 5 1060 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00236 126 1769 eptA 0/0 100.0 99.5 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00622 1 1074 Escherichia_coli_ampC 0/0 94.7 97.4 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig02078 103 435 Escherichia_coli_emrE 0/0 100.0 97.6 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00159 1584 2198 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00021 1423 2151 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00021 231 1055 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00172 567 1793 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig01539 368 844 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00711 125 1093 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00351 679 1884 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00622 1 1074 (Bla)AmpC2_Ecoli 0/0 94.7 97.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00351 679 1884 (Tet)tetB 0/0 100.0 99.8 AB089594:1-1206 (Tet)tetB NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00622 1 1074 (Bla)AmpC2_Ecoli 0/0 94.7 97.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00351 679 1884 (Tet)tetB 0/0 100.0 99.8 AB089594:1-1206 (Tet)tetB NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00622 1 1074 BLAEC 0/0 94.7 99.9 MEG_1280 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig01032 1 670 CPXAR 0/0 95.8 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00560 198 1388 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00159 5 1168 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00236 126 1769 EPTA 0/0 100.0 99.5 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00021 1423 2151 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00021 231 1055 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01348 386 820 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00172 567 1793 MDTG 0/0 100.0 99.4 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig01539 368 844 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig02078 103 435 MVRC 0/0 100.0 97.6 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00711 125 1093 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00111 522 845 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00351 679 1884 TETB 0/0 100.0 100.0 MEG_7042 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
Catt-HIM_048B
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00971 1 1180 mdf(A)_1 0/0 95.7 99.9 Y08743 mdf(A)
contig00899 23 679 qnrS1_1 0/0 100.0 100.0 AB187515 qnrS1 Ciprofloxacin
contig00452 372 1187 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00196 509 3613 acrF 0/0 100.0 99.5 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig01301 227 1048 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00682 477 1199 baeR 0/0 100.0 99.9 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00123 3055 4428 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00129 1004 1636 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00139 2800 3855 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01931 52 582 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00139 1262 2800 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00192 103 1746 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00198 1147 2340 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00021 3558 4691 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00971 2 1180 Escherichia_coli_mdfA 0/0 95.6 98.4 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig01673 1 577 evgA 0/0 93.8 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01290 1 817 gadX 0/0 99.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00029 1150 1563 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig01291 568 951 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00532 138 1385 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00257 1306 2514 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00747 305 1771 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00422 1644 2118 mphB 0/0 99.6 97.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00330 836 1804 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00899 23 679 QnrS1 0/0 100.0 100.0 DQ485529.1:0-657 QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri fluoroquinolone
contig00452 372 1187 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00748 383 1850 tolC 0/0 98.7 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 3558 4691 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00100 592 2493 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00899 23 679 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00452 372 1187 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 3558 4691 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00100 592 2493 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00899 23 679 (Flq)qnr-S1 0/0 100 100.0 AB187515:9737-10393 (Flq)qnr-S1 NA
contig00452 372 1187 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00198 1147 2340 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00196 509 3613 ACRF 0/0 100.0 99.5 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00496 542 2394 ASMA 0/0 100.0 98.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig01301 227 1048 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00682 477 1199 BAER 0/0 100.0 99.9 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00133 56 1246 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00021 3558 4691 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00123 2360 3058 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00123 3055 4428 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00129 1004 1636 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00429 1513 2593 EMRD 0/0 90.8 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00139 2800 3963 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01931 52 582 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00139 1262 2800 EMRY 0/0 100.0 99.0 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00192 103 1746 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01290 1 817 GADX 0/0 99.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00029 1150 1563 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig01291 562 951 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig01291 113 547 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00971 1 1180 MDFA 0/0 95.7 100.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00532 138 1385 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00257 1306 2514 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00747 305 1771 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00422 1644 2118 MPHB 0/0 99.6 97.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00100 592 2493 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00330 836 1804 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00899 23 679 QNRS 0/0 100.0 100.0 MEG_6020 Drugs:Fluoroquinolones:Quinolone_resistance_protein_Qnr:QNRS NA
contig01419 187 977 ROBA 0/0 90.9 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01532 543 865 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00452 372 1187 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Catt-HIM_068A
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00824 739 1461 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00342 532 1164 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01111 1 1103 emrA 0/0 94.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig01026 688 1218 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00076 110 1753 eptA 0/0 100.0 99.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00265 426 1619 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig01869 1 555 evgA 0/0 90.2 98.9 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00462 252 980 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01649 1 824 gadX 0/0 99.9 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00647 1294 1707 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00627 266 1423 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00301 395 1426 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00176 1 1397 mdtP 0/0 95.2 98.1 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00018 2040 3788 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00012 1192 2679 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig01151 78 1211 ugd 0/0 97.2 96.3 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
## [1] "No antibiotic resitance genes from ARG-ANNOT database were found"
NCBI
## [1] "No antibiotic resitance genes from NCBI database were found"
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00265 426 1619 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00202 1174 2950 ASMA 0/0 95.8 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00824 739 1461 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00342 532 1164 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01111 1 1103 EMRA 0/0 94.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig01026 688 1218 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00076 110 1753 EPTA 0/0 100.0 99.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00462 252 980 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01649 1 824 GADX 0/0 99.9 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00647 1294 1707 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00627 266 1423 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig02220 96 461 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00301 395 1426 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00176 1 1397 MDTP 0/0 95.2 98.1 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00018 2040 3788 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00166 1083 1952 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00313 2025 2347 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig01151 78 1211 UGD 0/0 97.2 96.3 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
Catt-HIM_073A
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00691 197 1354 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00625 1 1400 baeS 0/0 99.7 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00034 999 1631 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00404 758 1778 emrK 0/0 96.7 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00068 564 1094 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00210 168 1811 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00265 7 1140 Escherichia_coli_ampC 0/0 100.0 97.4 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00328 259 987 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01598 1 772 gadX 0/0 93.6 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00646 1019 1402 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00472 1 1187 mdtG 0/0 96.7 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00397 1302 1776 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00051 960 2708 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00197 270 1757 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00265 7 1140 (Bla)AmpC2_Ecoli 0/0 100 97.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00265 7 1140 (Bla)AmpC2_Ecoli 0/0 100 97.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00691 197 1354 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00625 1 1400 BAES 0/0 99.7 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00265 7 1140 BLAEC 0/0 100.0 98.1 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00534 213 911 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00034 999 1631 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00068 564 1094 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00210 168 1811 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00328 259 987 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01598 1 772 GADX 0/0 93.6 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00646 1013 1402 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00646 565 999 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00472 1 1187 MDTG 0/0 96.7 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig01908 97 462 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00397 1302 1776 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00051 960 2708 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
Catt-HIM_082A1
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00056 5239 5901 acrS 0/0 100.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00158 84 806 baeR 0/0 100.0 99.5 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00158 803 2206 baeS 0/0 100.0 98.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00053 2156 2788 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00529 4 1176 emrA 0/0 100.0 98.3 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00755 672 1727 emrK 0/0 100.0 98.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00855 397 1590 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00007 8147 9280 Escherichia_coli_ampC 0/0 100.0 97.6 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00407 1213 2370 Escherichia_coli_ampH 0/0 100.0 98.6 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00991 1249 1581 Escherichia_coli_emrE 0/0 100.0 99.4 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01513 25 639 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01296 1 823 gadX 0/0 99.8 97.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00657 62 475 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00085 3515 3898 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00324 215 1462 mdtA 0/0 100.0 98.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00125 964 4077 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00184 651 1877 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00364 1266 2474 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00357 1174 2406 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00397 387 1418 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00511 602 2068 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00686 1 964 pmrF 0/0 99.5 99.2 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig01319 72 1195 ugd 0/0 96.3 96.3 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 8147 9280 (Bla)AmpC2_Ecoli 0/0 100 97.6 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00407 1213 2370 (Bla)ampH_Ecoli 0/0 100 98.6 AP012030:395554-396711 (Bla)ampH_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 8147 9280 (Bla)AmpC2_Ecoli 0/0 100 97.6 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00407 1213 2370 (Bla)ampH_Ecoli 0/0 100 98.6 AP012030:395554-396711 (Bla)ampH_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00855 397 1590 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00056 5239 5901 ACRS 0/0 100.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00407 1213 2370 AMPH 0/0 100.0 98.6 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00679 273 2125 ASMA 0/0 100.0 98.2 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00158 84 806 BAER 0/0 100.0 99.5 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00158 803 2206 BAES 0/0 100.0 98.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00007 8147 9280 BLAEC 0/0 100.0 99.3 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00053 2156 2788 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00529 4 1176 EMRA 0/0 100.0 98.3 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00755 672 1835 EMRK 0/0 100.0 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01296 1 823 GADX 0/0 99.8 97.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00657 62 475 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00085 3509 3898 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00085 3061 3495 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00324 215 1462 MDTA 0/0 100.0 98.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00125 964 4077 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00184 651 1877 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00364 1266 2474 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00550 497 826 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00550 813 1178 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00357 1174 2406 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00397 387 1418 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00511 602 2068 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00991 1249 1581 MVRC 0/0 100.0 99.4 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00686 1 964 PMRF 0/0 99.5 99.2 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00035 5429 6298 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00172 2869 3191 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig01319 72 1195 UGD 0/0 96.3 96.3 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
Catt-KAT_009_A1
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00417 1201 2004 aph(3’’)-Ib_5 0/0 100.0 99.9 AF321551 aph(3’’)-Ib Streptomycin
contig00417 365 1201 aph(6)-Id_1 0/0 100.0 99.9 M28829 aph(6)-Id Streptomycin
contig01129 1 812 blaOXA-1_1 0/0 97.7 99.9 HQ170510 blaOXA-1 Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam
contig01025 17 877 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig01005 42 551 dfrA8_1 0/0 100.0 100.0 U10186 dfrA8 Trimethoprim
contig00173 4671 5903 mdf(A)_1 0/0 100.0 98.9 Y08743 mdf(A)
contig00417 2065 2880 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
contig00557 1439 2644 tet(B)_2 0/0 100.0 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00189 3062 6211 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00103 6882 8039 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00103 3766 6870 acrF 0/0 100.0 99.1 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00454 2689 3351 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00417 1201 2004 APH(3’’)-Ib 0/0 100.0 99.6 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00417 365 1201 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00756 1082 1903 bacA 0/0 100.0 99.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00426 764 1486 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00658 943 2316 cpxA 0/0 100.0 98.1 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00436 719 1351 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01005 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00206 880 2418 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00008 2550 3605 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00847 684 1214 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00008 1012 2550 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00054 2406 4049 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00189 1846 3039 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00020 9353 10486 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00883 144 1448 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00261 1222 2379 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00173 4671 5903 Escherichia_coli_mdfA 0/0 100.0 97.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00008 4129 4743 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00008 4748 8341 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00317 1586 2314 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00317 394 1218 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00766 215 1462 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00136 2008 5085 mdtC 0/0 100.0 97.9 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00325 1236 2393 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00562 772 1998 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00190 1 1204 mdtM 0/0 97.7 95.6 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00159 4593 6644 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00159 3130 4596 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00080 5870 6346 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig01129 1 812 OXA-1 0/0 97.7 99.9 JN420336.1:2230-1399 OXA-1 is a beta-lactamase found in E. coli cephalosporin, penam
contig00546 668 1636 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00417 2065 2880 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig01025 17 877 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00557 1439 2644 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00013 12612 14099 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00262 1512 2678 ugd 0/0 100.0 98.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00550 1286 2792 yojI 0/0 91.7 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01066 112 916 (AGly)aadA1-pm 0/0 96.9 99.6 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00417 1201 2004 (AGly)strA 0/0 100.0 99.8 AB366441:22458-23261 (AGly)strA NA
contig00417 365 1201 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00883 144 1448 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00020 9353 10486 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00261 1222 2379 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01129 1 812 (Bla)blaOXA-1 0/0 97.7 99.9 JQ682867:1-831 (Bla)blaOXA-1 NA
contig01025 17 877 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00307 1513 3414 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00417 2065 2880 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00557 1439 2644 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig01005 42 551 (Tmt)dfrA8 0/0 100.0 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01066 112 916 (AGly)aadA1-pm 0/0 96.9 99.6 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00417 1201 2004 (AGly)strA 0/0 100.0 99.8 AB366441:22458-23261 (AGly)strA NA
contig00417 365 1201 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00883 144 1448 (Bla)AmpC1_Ecoli 0/0 100.0 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00020 9353 10486 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00261 1222 2379 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01129 1 812 (Bla)blaOXA-1 0/0 97.7 99.9 JQ682867:1-831 (Bla)blaOXA-1 NA
contig01025 17 877 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00307 1513 3414 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00417 2065 2880 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00557 1439 2644 (Tet)tetB 0/0 100.0 99.7 AB089594:1-1206 (Tet)tetB NA
contig01005 42 551 (Tmt)dfrA8 0/0 100.0 100.0 U10186:711-1220 (Tmt)dfrA8 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00189 1846 3039 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00189 3062 6211 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00103 6882 8039 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00103 3766 6870 ACRF 0/0 100.0 99.1 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00454 2689 3351 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00261 1222 2379 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig01066 112 916 ANT3-DPRIME 0/0 96.9 99.6 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00417 1201 2028 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00417 365 1201 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00397 2008 3860 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00756 1082 1903 BACA 0/0 100.0 99.0 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00426 764 1486 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00483 1197 2387 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00020 9353 10486 BLAEC 0/0 100.0 98.5 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00658 248 946 CPXAR 0/0 100.0 99.6 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00658 943 2316 CPXAR 0/0 100.0 98.1 MEG_2119 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00436 719 1351 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01005 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00206 880 2418 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00009 174 1364 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00008 2550 3713 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00847 684 1214 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00008 1012 2550 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00054 2406 4049 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00008 4748 8341 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00317 1586 2314 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00317 394 1218 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00216 587 1021 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00173 4671 5903 MDFA 0/0 100.0 99.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00766 215 1462 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00136 2008 5085 MDTC 0/0 100.0 97.9 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00325 1236 2393 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00562 772 1998 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00495 2704 3033 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00495 2352 2717 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00190 1 1204 MDTM 0/0 97.7 95.6 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00159 4593 6644 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00159 3130 4596 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00080 5870 6346 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig01129 1 812 OXA 0/0 97.7 99.9 MEG_4980 Drugs:betalactams:Class_D_betalactamases:OXA NA
contig00307 1513 3414 PBP2 0/0 100.0 99.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00883 144 1448 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00546 668 1636 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00044 9120 9989 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00004 14455 14778 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00417 2065 2880 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00557 1439 2644 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
contig00262 1512 2678 UGD 0/0 100.0 98.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00550 1286 2792 YOGI 0/0 91.7 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Catt-KAT_013A1
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01264 164 983 bacA 0/0 99.8 98.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00132 1565 2938 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00118 2456 3059 CRP 0/0 95.4 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00662 1 1489 eptA 0/0 90.6 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00382 529 1722 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00158 687 1820 Escherichia_coli_ampC 0/0 100.0 97.5 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00589 1 332 Escherichia_coli_emrE 0/0 99.7 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01009 44 772 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01912 220 603 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00843 109 1266 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00454 329 1360 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00158 687 1820 (Bla)AmpC2_Ecoli 0/0 100 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00158 687 1820 (Bla)AmpC2_Ecoli 0/0 100 97.5 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00382 529 1722 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig01264 164 983 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00158 687 1820 BLAEC 0/0 100.0 98.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00132 870 1568 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00132 1565 2938 CPXAR 0/0 100.0 99.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00118 2456 3059 CRP 0/0 95.4 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00662 1 1489 EPTA 0/0 90.6 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01009 44 772 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01912 214 603 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00843 109 1266 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00454 329 1360 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00589 1 332 MVRC 0/0 99.7 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00742 92 961 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01388 533 856 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
Catt-KAT_036B
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 366 1190 gadX 0/0 100 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
ARG-ANNOT
## [1] "No antibiotic resitance genes from ARG-ANNOT database were found"
NCBI
## [1] "No antibiotic resitance genes from NCBI database were found"
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 366 1190 GADX 0/0 100 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
Home-BWE_054A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00947 844 1647 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00947 8 844 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig01185 1 792 blaTEM-104_1 0/0 92.0 100.0 AF516719 blaTEM-104
contig00280 940 1599 catA1_1 0/0 100.0 99.8 V00622 catA1 Chloramphenicol
contig00019 2913 4145 mdf(A)_1 0/0 100.0 98.0 Y08743 mdf(A)
contig00689 928 2174 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01002 197 1354 acrE 0/0 100.0 98.3 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00401 2775 3437 acrS 0/0 100.0 97.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00947 844 1647 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00947 8 844 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00172 283 1102 bacA 0/0 99.8 96.7 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00833 261 1664 baeS 0/0 100.0 97.1 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00280 940 1599 catI 0/0 100.0 99.8 V00622:243-903 catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii phenicol
contig00950 277 1650 cpxA 0/0 100.0 98.3 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00408 2162 2794 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00444 219 1391 emrA 0/0 100.0 97.9 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00432 2298 3305 emrK 0/0 95.5 97.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00444 1518 2048 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00432 760 2298 emrY 0/0 100.0 97.9 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00277 2397 4040 eptA 0/0 100.0 98.2 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00359 2308 3501 Escherichia_coli_acrA 0/0 100.0 98.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00092 2723 3856 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00112 5016 6173 Escherichia_coli_ampH 0/0 100.0 96.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00019 2913 4145 Escherichia_coli_mdfA 0/0 100.0 96.5 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig01110 329 943 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00283 1403 2131 gadW 0/0 100.0 95.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00283 210 1034 gadX 0/0 100.0 96.6 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00628 270 683 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00205 1 673 kdpE 0/0 99.3 96.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00033 8217 8600 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00671 154 1401 mdtA 0/0 100.0 97.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00144 739 3816 mdtC 0/0 100.0 96.3 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig00835 1 1214 mdtG 0/0 98.9 98.6 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00262 1291 2499 mdtH 0/0 100.0 98.2 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00180 2664 3896 mdtM 0/0 100.0 97.1 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00478 666 2717 mdtO 0/0 100.0 97.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00155 1199 1673 mphB 0/0 99.6 96.0 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00257 1820 2788 pmrF 0/0 100.0 98.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig01185 1 792 TEM-104 0/0 92.0 100.0 AF516719:214-1075 TEM-104 is a beta-lactamase found in Klebsiella pneumoniae. cephalosporin, monobactam, penam, penem
contig00689 928 2174 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00008 9704 11191 tolC 0/0 100.0 98.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00440 78 1244 ugd 0/0 100.0 96.0 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00947 844 1647 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00947 8 844 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00092 2723 3856 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00112 5016 6173 (Bla)ampH_Ecoli 0/0 100 96.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01185 1 792 (Bla)blaTEM-104 0/0 92 100.0 AF516719:215-1075 (Bla)blaTEM-104 NA
contig00029 5460 7361 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00280 940 1599 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00689 900 2174 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00947 844 1647 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00947 8 844 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00092 2723 3856 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00112 5016 6173 (Bla)ampH_Ecoli 0/0 100 96.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01185 1 792 (Bla)blaTEM-104 0/0 92 100.0 AF516719:215-1075 (Bla)blaTEM-104 NA
contig00029 5460 7361 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00280 940 1599 (Phe)catA1 0/0 100 99.8 V00622:244-903 (Phe)catA1 NA
contig00689 900 2174 (Tet)tetA 0/0 100 100.0 JX424423:94438-95712 (Tet)tetA NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00359 2308 3501 ACRA 0/0 100.0 98.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig01002 197 1354 ACRE 0/0 100.0 98.3 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00401 2775 3437 ACRS 0/0 100.0 97.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00112 5016 6173 AMPH 0/0 100.0 96.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00947 844 1669 APH3-DPRIME 0/0 99.8 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00947 8 844 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00249 2511 4363 ASMA 0/0 100.0 97.6 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00172 283 1102 BACA 0/0 99.8 97.0 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00833 261 1664 BAES 0/0 100.0 97.1 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00427 452 1642 BCR 0/0 100.0 96.1 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00092 2723 3856 BLAEC 0/0 100.0 98.5 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00280 929 1599 CATA 0/0 100.0 100.0 MEG_1593 Drugs:Phenicol:Chloramphenicol_acetyltransferases:CATA NA
contig00950 277 1650 CPXAR 0/0 100.0 98.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00408 2162 2794 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00444 219 1391 EMRA 0/0 100.0 97.9 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00738 1101 2216 EMRD 0/0 93.7 97.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00444 1518 2048 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00432 760 2298 EMRY 0/0 100.0 97.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00277 2397 4040 EPTA 0/0 100.0 98.2 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00283 1403 2131 GADW 0/0 100.0 97.5 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00283 210 1034 GADX 0/0 100.0 96.6 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00628 270 683 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00205 1 673 KDPE 0/0 99.3 96.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00033 8217 8606 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00033 8621 9055 MARR 0/0 100.0 98.6 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00019 2913 4145 MDFA 0/0 100.0 98.1 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00671 154 1401 MDTA 0/0 100.0 97.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00144 739 3816 MDTC 0/0 100.0 96.3 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig00835 1 1214 MDTG 0/0 98.9 99.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00262 1291 2499 MDTH 0/0 100.0 98.2 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00461 147 512 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00180 2664 3896 MDTM 0/0 100.0 97.1 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00478 666 2717 MDTO 0/0 100.0 97.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00155 1199 1673 MPHB 0/0 99.6 96.0 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00029 5460 7361 PBP2 0/0 100.0 98.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00257 1820 2788 PMRF 0/0 100.0 98.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig01147 128 997 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00616 592 914 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig01185 1 1159 TEM 0/0 91.4 99.3 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00689 900 2174 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00440 78 1244 UGD 0/0 100.0 96.0 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
Home-HIM_031A
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 3553 6702 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig01295 392 1054 acrS 0/0 100.0 99.2 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00060 2465 3187 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00060 1065 2468 baeS 0/0 100.0 98.2 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00121 3577 4950 cpxA 0/0 100.0 98.7 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00244 2146 2778 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00305 1508 2680 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00422 1046 2101 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00305 851 1381 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00034 2337 3530 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00242 1846 2979 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00116 1096 2400 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00047 1816 2973 Escherichia_coli_ampH 0/0 100.0 99.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00167 1454 2182 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00167 262 1086 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01572 88 471 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00546 215 1462 mdtA 0/0 100.0 98.3 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00609 927 2084 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00663 1 1225 mdtM 0/0 99.3 95.8 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00093 2615 4081 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig01899 1 433 mphB 0/0 90.8 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00719 485 1453 pmrF 0/0 100.0 99.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00020 3295 4782 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00270 1 1628 yojI 0/0 99.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00116 1096 2400 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00242 1846 2979 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00047 1816 2973 (Bla)ampH_Ecoli 0/0 100 99.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00116 1096 2400 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00242 1846 2979 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00047 1816 2973 (Bla)ampH_Ecoli 0/0 100 99.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00034 2337 3530 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00034 3553 6702 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig01295 392 1054 ACRS 0/0 100.0 99.2 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00047 1816 2973 AMPH 0/0 100.0 99.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00060 2465 3187 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00060 1065 2468 BAES 0/0 100.0 98.2 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00242 1846 2979 BLAEC 0/0 100.0 99.9 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00121 2882 3580 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00121 3577 4950 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00244 2146 2778 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00305 1508 2680 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00029 6037 7227 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00422 1046 2209 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00305 851 1381 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00167 1454 2182 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00167 262 1086 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01572 82 471 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00546 215 1462 MDTA 0/0 100.0 98.3 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00609 927 2084 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig01239 635 1000 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00339 1719 3092 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00663 1 1225 MDTM 0/0 99.3 95.8 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00093 2615 4081 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig01899 1 433 MPHB 0/0 90.8 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00116 1096 2400 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00719 485 1453 PMRF 0/0 100.0 99.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00419 694 1563 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00066 578 901 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00270 1 1628 YOGI 0/0 99.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Home-HIM_032A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00604 556 1359 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig01209 6 866 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00125 1789 2262 dfrA1_10 0/0 100 99.8 AF203818 dfrA1 Trimethoprim
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00604 556 1359 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00336 1127 2500 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00157 1034 1666 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00125 1789 2262 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00063 1557 2612 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01134 185 715 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00063 19 1557 emrY 0/0 100.0 99.0 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00013 2483 4126 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00308 661 1854 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00435 940 2073 Escherichia_coli_ampC 0/0 100.0 98.4 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00003 2617 3774 Escherichia_coli_ampH 0/0 100.0 99.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig01004 731 1063 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00063 3136 3750 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00200 514 1242 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig02459 57 470 H-NS 0/0 100.0 99.8 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00592 1 1131 mdtA 0/0 90.6 100.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00243 1226 2383 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00352 509 1735 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00284 17 1483 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00466 1299 1775 mphB 0/0 100.0 99.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig01209 6 866 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00006 5960 7447 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00125 905 1706 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00604 556 1359 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00435 940 2073 (Bla)AmpC2_Ecoli 0/0 100.0 98.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 2617 3774 (Bla)ampH_Ecoli 0/0 100.0 99.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01209 6 866 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig01090 172 822 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00125 1789 2262 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00125 905 1706 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00604 556 1359 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00435 940 2073 (Bla)AmpC2_Ecoli 0/0 100.0 98.4 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00003 2617 3774 (Bla)ampH_Ecoli 0/0 100.0 99.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01209 6 866 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig01090 172 822 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00125 1789 2262 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00308 661 1854 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00003 2617 3774 AMPH 0/0 100.0 99.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00125 905 1706 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00604 556 1383 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00651 1 1833 ASMA 0/0 98.9 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00435 940 2073 BLAEC 0/0 100.0 99.9 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00336 432 1130 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00336 1127 2500 CPXAR 0/0 100.0 99.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00157 1034 1666 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00125 1789 2262 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00295 910 2100 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00063 1557 2720 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01134 185 715 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00063 19 1557 EMRY 0/0 100.0 99.1 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00013 2483 4126 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00200 514 1242 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig02459 57 470 HNS 0/0 100.0 99.8 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00592 1 1131 MDTA 0/0 90.6 100.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00243 1226 2383 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00352 509 1735 MDTG 0/0 100.0 99.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig02004 260 625 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00284 17 1483 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00466 1299 1775 MPHB 0/0 100.0 99.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig01004 731 1063 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00373 1362 2231 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00042 1559 1882 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig01209 1 1229 TEM 0/0 96.9 99.3 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
Home-HIM_045A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00440 1392 2624 mdf(A)_1 0/0 100 98.5 Y08743 mdf(A) NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00472 1 2919 acrB 0/0 92.7 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00935 197 1354 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00085 4435 7308 acrF 0/0 92.6 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00247 4126 4788 acrS 0/0 100.0 99.4 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00333 2481 3884 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00240 3587 4960 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00362 2156 2788 CRP 0/0 100.0 99.5 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00184 3493 5031 emrB 0/0 100.0 99.9 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00886 662 1652 emrK 0/0 93.8 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01004 228 758 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00061 2495 4138 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00364 2318 3511 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00022 7469 8602 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00026 5757 6914 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00565 1362 1694 Escherichia_coli_emrE 0/0 100.0 91.9 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00440 1392 2624 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00165 364 978 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00165 983 4576 evgS 0/0 100.0 98.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00370 725 1453 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00154 5416 5829 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig01198 309 943 kdpE 0/0 93.7 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00357 2066 2449 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00412 1236 2393 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00122 4636 5862 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00072 3426 4634 mdtH 0/0 100.0 98.6 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00016 821 2053 mdtM 0/0 100.0 96.1 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00027 8561 10612 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00027 7098 8564 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00201 289 765 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00052 6132 7100 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00058 376 1863 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00371 108 1751 yojI 0/0 100.0 98.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00022 7469 8602 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00026 5757 6914 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00022 7469 8602 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00026 5757 6914 (Bla)ampH_Ecoli 0/0 100 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00364 2318 3511 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00472 1 2919 ACRB 0/0 92.7 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00935 197 1354 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00085 4435 7308 ACRF 0/0 92.6 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00247 4126 4788 ACRS 0/0 100.0 99.4 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00026 5757 6914 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00564 865 2689 ASMA 0/0 98.4 96.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00333 2481 3884 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00022 7469 8602 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00240 2892 3590 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00240 3587 4960 CPXAR 0/0 100.0 99.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00362 2156 2788 CRP 0/0 100.0 99.5 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00184 3493 5031 EMRB 0/0 100.0 99.9 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00226 3772 4962 EMRD 0/0 100.0 99.8 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig01004 228 758 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00061 2495 4138 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00165 983 4576 EVGS 0/0 100.0 98.9 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00370 725 1453 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00154 5416 5829 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig01198 309 943 KDPE 0/0 93.7 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00357 2060 2449 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00357 1612 2046 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00440 1392 2624 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00412 1236 2393 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00122 4636 5862 MDTG 0/0 100.0 99.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00072 3426 4634 MDTH 0/0 100.0 98.6 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00016 821 2053 MDTM 0/0 100.0 96.1 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00027 8561 10612 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00027 7098 8564 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00201 289 765 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00565 1362 1694 MVRC 0/0 100.0 91.9 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00052 6132 7100 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00062 5976 6845 ROBA 0/0 100.0 99.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00010 5613 5936 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00371 108 1751 YOGI 0/0 100.0 98.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Home-HIM_047B
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00667 1332 1757 fosA_7 0/0 100 96.5 AEXB01000013 fosA Fosfomycin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00588 1053 2246 Enterobacter_cloacae_acrA 0/0 100 94.9 DQ679966:299-1493 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00667 1332 1757 FosA2 0/0 100 92.0 EU487198:216-642 An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. fosfomycin
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00667 1332 1757 (Fcyn)FosA2 0/0 100 92 EU487198:217-642 (Fcyn)FosA2 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00667 1332 1757 (Fcyn)FosA2 0/0 100 92 EU487198:217-642 (Fcyn)FosA2 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00588 1053 2246 ACRB 0/0 100.0 94.9 MEG_402 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00488 1757 2816 ACT 0/0 92.5 99.1 MEG_439 Drugs:betalactams:Class_C_betalactamases:ACT NA
contig00667 1332 1913 FOSA 0/0 100.0 92.6 MEG_2990 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
Home-HIM_048A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00196 1963 3195 mdf(A)_1 0/0 100 97.9 Y08743 mdf(A) NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00952 197 1283 acrE 0/0 93.9 98.6 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00774 1083 1745 acrS 0/0 100.0 98.3 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00577 1958 2777 bacA 0/0 99.8 98.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00599 1392 2113 baeR 0/0 99.9 97.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00599 1 1395 baeS 0/0 99.4 90.5 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00631 1127 2500 cpxA 0/0 100.0 98.4 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00145 2675 3307 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00054 3216 4388 emrA 0/0 100.0 98.1 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00054 4405 5943 emrB 0/0 100.0 98.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00009 4153 5208 emrK 0/0 100.0 97.5 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00054 2559 3089 emrR 0/0 100.0 98.7 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00009 2615 4153 emrY 0/0 100.0 97.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00039 2507 4150 eptA 0/0 100.0 90.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00706 208 1401 Escherichia_coli_acrA 0/0 100.0 99.2 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00086 3660 4793 Escherichia_coli_ampC 0/0 100.0 98.1 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00108 2314 3471 Escherichia_coli_ampH 0/0 100.0 97.4 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00052 1080 1412 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00196 1963 3195 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00009 5732 6346 evgA 0/0 100.0 98.9 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00009 6351 9944 evgS 0/0 100.0 96.2 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00334 21 749 gadW 0/0 100.0 99.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00926 365 1189 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00684 1 632 kdpE 0/0 93.2 96.0 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00059 5216 5599 marA 0/0 100.0 98.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00334 1112 4225 mdtF 0/0 100.0 97.3 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00353 733 1959 mdtG 0/0 100.0 98.1 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00266 367 1398 mdtN 0/0 100.0 95.5 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00266 1398 3449 mdtO 0/0 100.0 96.9 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00266 3446 4912 mdtP 0/0 100.0 97.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00051 5071 6819 msbA 0/0 100.0 98.1 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00159 4360 5328 pmrF 0/0 100.0 97.8 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00044 6944 8431 tolC 0/0 100.0 98.1 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 3660 4793 (Bla)AmpC2_Ecoli 0/0 100 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00108 2314 3471 (Bla)ampH_Ecoli 0/0 100 97.4 AP012030:395554-396711 (Bla)ampH_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 3660 4793 (Bla)AmpC2_Ecoli 0/0 100 98.1 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00108 2314 3471 (Bla)ampH_Ecoli 0/0 100 97.4 AP012030:395554-396711 (Bla)ampH_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00706 208 1401 ACRA 0/0 100.0 99.2 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00952 197 1283 ACRE 0/0 93.9 98.6 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00774 1083 1745 ACRS 0/0 100.0 98.3 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00108 2314 3471 AMPH 0/0 100.0 97.4 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00406 1889 3742 ASMA 0/0 100.0 98.0 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00577 1958 2777 BACA 0/0 99.8 98.4 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00599 1392 2113 BAER 0/0 99.9 97.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00599 1 1395 BAES 0/0 99.4 90.5 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00005 14028 15218 BCR 0/0 100.0 96.3 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00086 3660 4793 BLAEC 0/0 100.0 99.9 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00631 432 1130 CPXAR 0/0 100.0 97.8 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00631 1127 2500 CPXAR 0/0 100.0 98.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00145 2675 3307 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00054 3216 4388 EMRA 0/0 100.0 98.1 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00054 4405 5943 EMRB 0/0 100.0 98.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00100 2625 3815 EMRD 0/0 100.0 98.2 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00009 4153 5316 EMRK 0/0 100.0 97.3 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00054 2559 3089 EMRR 0/0 100.0 98.7 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00009 2615 4153 EMRY 0/0 100.0 97.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00039 2507 4150 EPTA 0/0 100.0 90.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00009 6351 9944 EVGS 0/0 100.0 97.3 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00334 21 749 GADW 0/0 100.0 99.6 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00926 365 1189 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00684 1 632 KDPE 0/0 93.2 96.0 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00059 5216 5605 MARA 0/0 100.0 98.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00059 5620 6054 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00196 1963 3195 MDFA 0/0 100.0 98.0 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00334 1112 4225 MDTF 0/0 100.0 97.3 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00353 733 1959 MDTG 0/0 100.0 98.2 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00084 6685 7014 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00084 6333 6698 MDTJ 0/0 100.0 97.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00501 1824 3197 MDTK 0/0 100.0 98.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00266 367 1398 MDTN 0/0 100.0 95.5 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00266 1398 3449 MDTO 0/0 100.0 96.9 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00266 3446 4912 MDTP 0/0 100.0 97.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00051 5071 6819 MSBA 0/0 100.0 98.1 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00052 1080 1412 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00159 4360 5328 PMRF 0/0 100.0 97.8 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00110 5335 6204 ROBA 0/0 100.0 97.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
Home-HIM_068B
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01906 205 781 CRP 0/0 91.2 99.3 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00049 105 1643 emrB 0/0 100.0 99.8 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig01375 1 1008 emrK 0/0 95.5 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00472 161 691 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00236 1 1568 eptA 0/0 95.4 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00401 67 1260 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00761 412 1545 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig01066 1 1276 Escherichia_coli_ampC1_beta-lactamase 0/0 97.8 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig01206 311 925 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00908 2 826 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00010 3508 3921 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00624 650 1033 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00975 1 1130 mdtA 0/0 90.5 97.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00244 918 2075 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00117 909 2117 mdtH 0/0 100.0 99.9 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00072 651 2399 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01066 1 1276 (Bla)AmpC1_Ecoli 0/0 97.8 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00761 412 1545 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01066 1 1276 (Bla)AmpC1_Ecoli 0/0 97.8 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00761 412 1545 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00401 67 1260 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00761 412 1545 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig01079 293 991 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig01906 205 781 CRP 0/0 91.2 99.3 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00049 105 1643 EMRB 0/0 100.0 99.8 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00472 161 691 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00236 1 1568 EPTA 0/0 95.4 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00908 2 826 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00010 3508 3921 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00624 644 1033 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00624 195 629 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00975 1 1130 MDTA 0/0 90.5 97.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00244 918 2075 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00117 909 2117 MDTH 0/0 100.0 99.9 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00877 1000 1365 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00072 651 2399 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig01066 1 1276 PBP4B 0/0 97.8 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig01024 199 1068 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00784 766 1088 SOXS 0/0 99.7 99.4 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
Home-HIM_071A
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00220 2614 3276 acrS 0/0 100.0 99.8 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00904 49 868 bacA 0/0 99.8 98.2 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00675 617 1339 baeR 0/0 100.0 98.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00388 620 1252 CRP 0/0 100.0 99.4 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00173 522 1694 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00328 1774 2829 emrK 0/0 100.0 98.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00173 1821 2351 emrR 0/0 100.0 99.6 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00328 236 1774 emrY 0/0 100.0 98.6 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00071 409 2052 eptA 0/0 100.0 99.5 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00086 158 1291 Escherichia_coli_ampC 0/0 100.0 97.6 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00014 3981 5138 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00863 138 752 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00776 20 748 gadW 0/0 100.0 94.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00958 584 1408 gadX 0/0 100.0 98.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00017 1186 1599 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00288 951 1334 marA 0/0 100.0 99.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00108 2447 3604 mdtE 0/0 100.0 99.2 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00407 517 1743 mdtG 0/0 100.0 98.7 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00179 1801 3033 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00857 364 1395 mdtN 0/0 100.0 98.2 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00202 60 1526 mdtP 0/0 100.0 97.6 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig01697 7 483 mphB 0/0 100.0 98.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00380 470 1957 tolC 0/0 100.0 98.8 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 158 1291 (Bla)AmpC2_Ecoli 0/0 100 97.6 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00014 3981 5138 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00086 158 1291 (Bla)AmpC2_Ecoli 0/0 100 97.6 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00014 3981 5138 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00220 2614 3276 ACRS 0/0 100.0 99.8 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00014 3981 5138 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00199 1569 3421 ASMA 0/0 100.0 98.9 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00904 49 868 BACA 0/0 99.8 98.2 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00675 617 1339 BAER 0/0 100.0 98.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00852 1 1172 BCR 0/0 98.4 97.3 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00086 158 1291 BLAEC 0/0 100.0 99.1 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00388 620 1252 CRP 0/0 100.0 99.4 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00173 522 1694 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00328 1774 2869 EMRK 0/0 94.2 98.8 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00173 1821 2351 EMRR 0/0 100.0 99.6 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00328 236 1774 EMRY 0/0 100.0 98.6 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00071 409 2052 EPTA 0/0 100.0 99.5 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00776 20 748 GADW 0/0 100.0 99.2 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00958 584 1408 GADX 0/0 100.0 98.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00017 1186 1599 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00288 945 1334 MARA 0/0 100.0 99.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00288 497 931 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00108 2447 3604 MDTE 0/0 100.0 99.2 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00407 517 1743 MDTG 0/0 100.0 98.9 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig01182 96 425 MDTI 0/0 100.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00179 1801 3033 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00857 364 1395 MDTN 0/0 100.0 98.2 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00202 60 1526 MDTP 0/0 100.0 97.6 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig01697 7 483 MPHB 0/0 100.0 98.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00476 297 1166 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00838 25 347 SOXS 0/0 99.7 98.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
Home-HIM_072A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00100 2676 3149 dfrA15_2 0/0 100 100.0 AF221900 dfrA15 Trimethoprim
contig00100 439 1305 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00980 187 1344 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig01545 98 917 bacA 0/0 99.8 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00090 2806 4209 baeS 0/0 100.0 99.7 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig01048 1 1362 cpxA 0/0 99.1 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00102 447 1079 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00100 2676 3149 dfrA15 0/0 100.0 100.0 KF534911:39-513 dfrA15 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig01093 286 1321 emrK 0/0 98.1 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01525 31 561 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00026 4748 5905 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig01440 206 820 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00252 97 825 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01473 225 984 gadX 0/0 92.1 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00707 177 1424 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00384 573 1799 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00020 3138 4604 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00214 349 1317 pmrF 0/0 100.0 99.4 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00100 439 1278 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00048 3489 4976 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00100 1783 2584 (AGly)aadA1-pm 0/0 96.5 96.4 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00026 4748 5905 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00100 439 1278 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00100 2676 3149 (Tmt)dfrA15b 0/0 100.0 99.2 AJ867237:177-650 (Tmt)dfrA15b NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00100 1783 2584 (AGly)aadA1-pm 0/0 96.5 96.4 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00026 4748 5905 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00100 439 1278 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00100 2676 3149 (Tmt)dfrA15b 0/0 100.0 99.2 AJ867237:177-650 (Tmt)dfrA15b NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00980 187 1344 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00026 4748 5905 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig01545 98 917 BACA 0/0 99.8 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00090 2806 4209 BAES 0/0 100.0 99.7 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00211 1263 2453 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig01048 1 1362 CPXAR 0/0 99.1 99.6 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00102 447 1079 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00100 2676 3149 DFRA 0/0 100.0 99.4 MEG_2492 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00183 2230 3353 EMRD 0/0 94.4 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig01525 31 561 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00252 97 825 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01473 225 984 GADX 0/0 92.1 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01387 346 780 MARR 0/0 100.0 98.2 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00707 177 1424 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00384 573 1799 MDTG 0/0 100.0 99.4 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00020 3138 4604 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00214 349 1317 PMRF 0/0 100.0 99.4 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00986 176 1045 ROBA 0/0 100.0 98.8 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00124 2083 2406 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00100 312 1279 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
Home-HIM_073B
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 2698 3534 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00015 3884 4366 dfrA14_5 0/0 100 99.8 DQ388123 dfrA14 Trimethoprim
contig00015 4966 5781 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 2698 3534 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00981 174 896 baeR 0/0 100.0 96.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00146 2306 2938 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00015 3884 4366 dfrA14 0/0 100.0 100.0 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00422 1 1103 emrA 0/0 94.0 97.8 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig02586 1 523 emrR 0/0 98.5 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00131 1 1481 eptA 0/0 90.1 97.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00039 2681 3814 Escherichia_coli_ampC 0/0 100.0 97.9 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig01343 129 461 Escherichia_coli_emrE 0/0 100.0 91.6 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01046 20 634 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01060 168 896 gadW 0/0 100.0 96.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01564 1 824 gadX 0/0 99.9 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig02681 168 560 H-NS 0/0 94.9 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00334 561 1718 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00069 147 2198 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00069 2195 3661 mdtP 0/0 100.0 96.5 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00976 728 1202 mphB 0/0 99.6 97.0 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00015 4966 5781 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00757 1 1535 yojI 0/0 93.4 97.5 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 2698 3534 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00039 2681 3814 (Bla)AmpC2_Ecoli 0/0 100 97.9 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00015 4966 5781 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00015 3884 4357 (Tmt)dfrA14 0/0 100 99.8 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 2698 3534 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00039 2681 3814 (Bla)AmpC2_Ecoli 0/0 100 97.9 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00015 4966 5781 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00015 3884 4357 (Tmt)dfrA14 0/0 100 99.8 GU726917:72-545 (Tmt)dfrA14 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00015 2698 3534 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00981 174 896 BAER 0/0 100.0 96.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00907 158 1348 BCR 0/0 100.0 96.4 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00039 2681 3814 BLAEC 0/0 100.0 99.2 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig01691 177 875 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00146 2306 2938 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00015 3884 4357 DFRA 0/0 100.0 100.0 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00422 1 1103 EMRA 0/0 94.0 97.8 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig02586 1 523 EMRR 0/0 98.5 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00131 1 1481 EPTA 0/0 90.1 97.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01060 168 896 GADW 0/0 100.0 96.8 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01564 1 824 GADX 0/0 99.9 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig02681 168 560 HNS 0/0 94.9 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00334 561 1718 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00251 1083 1412 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00251 731 1096 MDTJ 0/0 100.0 97.8 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00069 147 2198 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00069 2195 3661 MDTP 0/0 100.0 96.5 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00976 728 1202 MPHB 0/0 99.6 97.0 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig01343 129 461 MVRC 0/0 100.0 91.6 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00733 548 1417 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01022 129 451 SOXS 0/0 99.7 97.8 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00015 4966 5781 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00757 1 1535 YOGI 0/0 93.4 97.5 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Home-HIM_075A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00029 15382 16185 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00029 14546 15382 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00029 12826 13299 dfrA1_10 0/0 100.0 99.8 AF203818 dfrA1 Trimethoprim
contig00307 4536 4958 fosA7_1 0/0 100.0 94.1 LAPJ01000014 fosA7 Fosfomycin
contig00019 7740 8972 mdf(A)_1 0/0 100.0 98.5 Y08743 mdf(A)
contig00029 10598 11464 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00029 16246 17061 sul2_3 0/0 100.0 100.0 HQ840942 sul2 Sulfamethoxazole
contig00113 1749 2995 tet(A)_6 0/0 97.8 100.0 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00228 3904 7053 acrB 0/0 100.0 99.2 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00158 5904 9017 acrD 0/0 100.0 99.0 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00175 5122 8226 acrF 0/0 100.0 98.9 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00537 392 1054 acrS 0/0 100.0 98.8 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00029 15382 16185 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00029 14546 15382 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00068 93 912 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00191 4487 5209 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00191 3087 4490 baeS 0/0 100.0 99.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00483 1368 2741 cpxA 0/0 100.0 98.7 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00297 2156 2788 CRP 0/0 100.0 99.5 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00029 12826 13299 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00363 1 1150 emrA 0/0 98.0 98.5 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00319 1 1531 emrB 0/0 99.5 99.8 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00093 1345 2400 emrK 0/0 100.0 99.6 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00363 1277 1807 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00131 2495 4138 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00228 2688 3881 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00037 3213 4346 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00006 21474 22778 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00119 4910 6067 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00073 1397 1729 Escherichia_coli_emrE 0/0 100.0 98.8 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00019 7740 8972 Escherichia_coli_mdfA 0/0 100.0 96.9 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00093 2924 3538 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00093 3543 7136 evgS 0/0 100.0 98.9 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00307 4536 4958 FosA7 0/0 100.0 94.1 LAPJ01000014.1:36822-37245 fosA7 is an enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. fosfomycin
contig00094 1568 2296 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00094 376 1200 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00282 5387 5800 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00674 347 996 kdpE 0/0 95.9 97.2 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00219 5514 5897 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00288 4317 5564 mdtA 0/0 100.0 98.0 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00288 1195 4317 mdtB 0/0 100.0 97.8 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00094 5797 6954 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00094 2659 5772 mdtF 0/0 100.0 98.6 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00372 2316 3542 mdtG 0/0 100.0 99.2 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00066 9270 10478 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00070 1436 2668 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00192 6643 7674 mdtN 0/0 100.0 98.1 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00192 4592 6643 mdtO 0/0 100.0 98.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00192 3129 4595 mdtP 0/0 100.0 98.2 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00033 4431 4905 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00008 15972 17720 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00116 9184 10152 pmrF 0/0 100.0 99.7 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00029 10598 11437 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00029 16246 17061 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00113 1749 2995 tet(A) 0/0 97.8 100.0 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00078 5917 7404 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00324 1393 3036 yojI 0/0 100.0 98.2 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00029 11942 12743 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00029 15382 16185 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00029 14546 15382 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00006 21474 22778 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00037 3213 4346 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00119 4910 6067 (Bla)ampH_Ecoli 0/0 100.0 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00105 1015 2916 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00307 4536 4958 (Fcyn)FosA7 0/0 100.0 94.1 LAPJ01000014:36823-37245 (Fcyn)FosA7 NA
contig00029 10598 11437 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00029 16246 17061 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00113 1749 3023 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00113 1068 1718 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00029 12826 13299 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00029 11942 12743 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00029 15382 16185 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00029 14546 15382 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00006 21474 22778 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00037 3213 4346 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00119 4910 6067 (Bla)ampH_Ecoli 0/0 100.0 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00105 1015 2916 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00307 4536 4958 (Fcyn)FosA7 0/0 100.0 94.1 LAPJ01000014:36823-37245 (Fcyn)FosA7 NA
contig00029 10598 11437 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00029 16246 17061 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00113 1749 3023 (Tet)tetA 0/0 100.0 100.0 JX424423:94438-95712 (Tet)tetA NA
contig00113 1068 1718 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00029 12826 13299 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00228 2688 3881 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00228 3904 7053 ACRB 0/0 100.0 99.2 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00158 5904 9017 ACRD 0/0 100.0 99.0 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00175 5122 8226 ACRF 0/0 100.0 98.9 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00537 392 1054 ACRS 0/0 100.0 98.8 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00119 4910 6067 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00029 11942 12743 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00029 15382 16209 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00029 14546 15382 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00164 7396 9248 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00068 93 912 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00191 4487 5209 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00191 3087 4490 BAES 0/0 100.0 99.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00275 1757 2947 BCR 0/0 100.0 98.2 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00037 3213 4346 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00483 673 1371 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00483 1368 2741 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00297 2156 2788 CRP 0/0 100.0 99.5 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00029 12826 13299 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00363 1 1150 EMRA 0/0 98.0 98.5 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00319 1 1531 EMRB 0/0 99.5 99.8 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00017 22477 23667 EMRD 0/0 100.0 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00093 1345 2508 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00363 1277 1807 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00131 2495 4138 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00093 3543 7136 EVGS 0/0 100.0 98.9 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00307 4536 4958 FOSA 0/0 100.0 94.1 MEG_2988 Drugs:Fosfomycin:Fosfomycin_thiol_transferases:FOSA NA
contig00094 1568 2296 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00094 376 1200 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00282 5387 5800 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00674 347 996 KDPE 0/0 95.9 97.2 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00219 5514 5903 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00219 5917 6351 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00019 7740 8972 MDFA 0/0 100.0 98.5 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00288 4317 5564 MDTA 0/0 100.0 98.0 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00288 1195 4317 MDTB 0/0 100.0 97.8 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00094 5797 6954 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00094 2659 5772 MDTF 0/0 100.0 98.6 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00372 2316 3542 MDTG 0/0 100.0 99.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00066 9270 10478 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00420 3167 3486 MDTI 0/0 97.0 99.4 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00122 9933 11174 MDTK 0/0 90.4 99.2 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00070 1436 2668 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00192 6643 7674 MDTN 0/0 100.0 98.1 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00192 4592 6643 MDTO 0/0 100.0 98.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00192 3129 4595 MDTP 0/0 100.0 98.2 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00033 4431 4905 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00008 15972 17720 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00073 1397 1729 MVRC 0/0 100.0 98.8 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00105 1015 2916 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00006 21474 22778 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00116 9184 10152 PMRF 0/0 100.0 99.7 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00060 11897 12766 ROBA 0/0 100.0 99.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00411 1934 2257 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00029 10471 11438 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00029 16246 17061 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00113 1749 3023 TETA 0/0 100.0 100.0 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA
contig00324 1393 3036 YOGI 0/0 100.0 98.2 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Home-HIM_82A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00024 7677 8480 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00024 6841 7677 aph(6)-Id_1 0/0 100 99.9 M28829 aph(6)-Id Streptomycin
contig00935 575 1435 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig01210 42 551 dfrA8_1 0/0 100 100.0 U10186 dfrA8 Trimethoprim
contig00024 1383 2304 mph(A)_2 1/1 100 99.6 U36578 mph(A) Erythromycin, Azithromycin, Spiramycin, Telithromycin
contig00024 8541 9356 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 2457 5606 acrB 0/0 100.0 100.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00024 7677 8480 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00024 6841 7677 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00039 5548 6270 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00039 4148 5551 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00643 1037 2410 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00305 566 1198 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01210 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00412 2249 3308 emrA 0/0 90.4 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00412 694 2232 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00705 386 1441 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00276 1167 2810 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00005 1241 2434 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00277 2915 4048 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00131 4387 5691 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 100.0 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00363 1586 2314 gadW 0/0 100.0 94.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00363 394 1218 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00040 3528 3941 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00461 1226 2383 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00570 731 1957 mdtG 0/0 100.0 99.7 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00168 1239 2447 mdtH 0/0 100.0 98.8 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00798 481 1713 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00054 6565 7596 mdtN 0/0 100.0 99.9 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00054 3129 4595 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00024 1383 2288 mphA 0/0 100.0 99.9 D16251.1:2531-1625 The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. macrolide
contig00230 1699 2175 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00004 3126 4874 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00024 8541 9356 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00935 575 1435 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00021 5667 7154 tolC 0/0 100.0 99.9 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00617 934 2517 yojI 0/0 96.3 99.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00024 7677 8480 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00024 6841 7677 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00131 4387 5691 (Bla)AmpC1_Ecoli 0/0 100 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00277 2915 4048 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00935 575 1435 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00024 1383 2288 (MLS)mph(A) 0/0 100 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00024 8541 9356 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig01210 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00024 7677 8480 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00024 6841 7677 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00131 4387 5691 (Bla)AmpC1_Ecoli 0/0 100 100.0 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00277 2915 4048 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00935 575 1435 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00024 1383 2288 (MLS)mph(A) 0/0 100 99.9 DQ445270:1626-2531 (MLS)mph(A) NA
contig00024 8541 9356 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig01210 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 1241 2434 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00005 2457 5606 ACRB 0/0 100.0 100.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00277 2915 4048 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00024 7677 8504 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00024 6841 7677 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00039 5548 6270 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00039 4148 5551 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00643 342 1040 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00643 1037 2410 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00305 566 1198 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01210 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00412 2249 3308 EMRA 0/0 90.4 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00412 694 2232 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00013 164 1354 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00705 386 1549 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00276 1167 2810 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00363 1586 2314 GADW 0/0 100.0 99.9 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00363 394 1218 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00040 3528 3941 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00400 2837 3271 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00461 1226 2383 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00570 731 1957 MDTG 0/0 100.0 99.7 MEG_3754 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00168 1239 2447 MDTH 0/0 100.0 98.8 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00901 380 709 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00901 28 393 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00798 481 1713 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00054 6565 7596 MDTN 0/0 100.0 99.9 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00054 3129 4595 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00024 1383 2304 MPHA 1/1 100.0 99.6 MEG_4030 Drugs:MLS:Macrolide_phosphotransferases:MPHA NA
contig00230 1699 2175 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00004 3126 4874 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00131 4387 5691 PBP4B 0/0 100.0 100.0 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00840 1554 1870 SOXS 0/0 97.8 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00024 8541 9356 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00617 934 2517 YOGI 0/0 96.3 99.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Home-KAT_009A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00753 119 922 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig01741 1 839 blaTEM-1B_1 0/0 97.4 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00681 764 1337 dfrA7_5 3/4 100.0 98.8 AJ419170 dfrA7 Trimethoprim
contig00295 558 1790 mdf(A)_1 0/0 100.0 97.6 Y08743 mdf(A)
contig00753 983 1798 sul2_3 0/0 100.0 100.0 HQ840942 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01035 197 1354 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00753 119 922 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00021 41 860 bacA 0/0 99.8 97.6 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig01020 843 1564 baeR 0/0 99.9 97.8 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00545 1117 2490 cpxA 0/0 100.0 97.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig01089 878 1475 CRP 0/0 94.5 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00681 864 1337 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00627 136 1674 emrB 0/0 100.0 98.2 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00788 899 1954 emrK 0/0 100.0 97.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01310 71 601 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00112 1141 2784 eptA 0/0 100.0 98.1 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig01099 64 1257 Escherichia_coli_acrA 0/0 100.0 99.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00033 3096 4229 Escherichia_coli_ampC 0/0 100.0 98.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00295 558 1790 Escherichia_coli_mdfA 0/0 100.0 96.0 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00773 344 958 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00716 1 701 gadW 0/0 96.2 95.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01401 192 1016 gadX 0/0 100.0 96.8 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00109 1021 1404 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00277 154 1401 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00331 1 3040 mdtC 0/0 98.8 96.8 U00096:2158385-2161463 MdtC is a transporter that forms a heteromultimer complex with MdtB to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. In the absence of MdtB MdtC can form a homomultimer complex that results in a functioning efflux complex with a narrower drug specificity. mdtC corresponds to 3 loci in Pseudomonas aeruginosa PAO1 (gene name: muxC/muxB) and 3 loci in Pseudomonas aeruginosa LESB58. aminocoumarin
contig01054 403 1535 mdtE 0/0 97.8 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00494 718 1944 mdtG 0/0 100.0 98.0 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00378 427 2175 msbA 0/0 100.0 98.8 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00402 754 1722 pmrF 0/0 100.0 98.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00753 983 1798 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig01741 1 839 TEM-1 0/0 97.4 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00251 1617 3104 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00824 78 1244 ugd 0/0 100.0 99.8 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00753 119 922 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00033 3096 4229 (Bla)AmpC2_Ecoli 0/0 100.0 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig01741 1 839 (Bla)blaTEM-105 0/0 97.4 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00753 983 1798 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig01082 454 1104 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00681 864 1337 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00753 119 922 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00033 3096 4229 (Bla)AmpC2_Ecoli 0/0 100.0 98.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig01741 1 839 (Bla)blaTEM-105 0/0 97.4 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00753 983 1798 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig01082 454 1104 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00681 864 1337 (Tmt)dhfr7 0/0 100.0 100.0 X58425:594-1067 (Tmt)dhfr7 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01099 64 1257 ACRA 0/0 100.0 99.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig01035 197 1354 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00753 119 946 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00021 41 860 BACA 0/0 99.8 97.6 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig01020 843 1564 BAER 0/0 99.9 97.8 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00033 3096 4229 BLAEC 0/0 100.0 98.2 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00545 422 1120 CPXAR 0/0 100.0 99.6 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00545 1117 2490 CPXAR 0/0 100.0 98.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig01089 878 1475 CRP 0/0 94.5 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00681 864 1337 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00627 136 1674 EMRB 0/0 100.0 98.2 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00788 899 1984 EMRK 0/0 93.3 97.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01310 71 601 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00112 1141 2784 EPTA 0/0 100.0 98.1 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00716 1 701 GADW 0/0 96.2 97.4 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01401 192 1016 GADX 0/0 100.0 96.8 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00109 1015 1404 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00109 567 1001 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00295 558 1790 MDFA 0/0 100.0 97.7 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00277 154 1401 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00331 1 3040 MDTC 0/0 98.8 96.8 MEG_3749 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTC NA
contig01054 403 1535 MDTE 0/0 97.8 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00494 718 1944 MDTG 0/0 100.0 98.2 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00380 2576 2905 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00206 1709 3081 MDTK 0/0 99.9 98.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00378 427 2175 MSBA 0/0 100.0 98.8 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00402 754 1722 PMRF 0/0 100.0 98.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00741 1207 2076 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00753 983 1798 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00824 78 1244 UGD 0/0 100.0 99.8 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
Home-KAT_013A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 3746 4549 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00010 2910 3746 aph(6)-Id_1 0/0 100 99.9 M28829 aph(6)-Id Streptomycin
contig00291 575 1435 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig01148 43 552 dfrA8_1 0/0 100 100.0 U10186 dfrA8 Trimethoprim
contig00010 4610 5425 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
contig00489 742 1947 tet(B)_2 0/0 100 100.0 AF326777 tet(B) Doxycycline, Tetracycline, Minocycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00282 1233 2390 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00010 3746 4549 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00010 2910 3746 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig01472 115 936 bacA 0/0 100.0 99.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00392 909 1631 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00060 2600 3973 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00030 916 1548 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01148 43 552 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00673 515 1570 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01023 218 1298 Escherichia_coli_acrA 0/0 90.5 99.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 6574 7707 Escherichia_coli_ampC 0/0 100.0 98.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00473 617 949 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00314 1 1212 mdtA 0/0 97.1 99.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00503 89 1246 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00131 1287 2513 mdtG 0/0 100.0 99.3 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00200 532 1764 mdtM 0/0 100.0 97.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00010 4610 5425 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00291 575 1435 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00489 742 1947 tet(B) 0/0 100.0 99.8 AB089595:0-1206 Tet(B) is a tetracycline efflux protein expressed in many Gram-negative bacteria. It confers resistance to tetracycline doxycycline and minocycline but not tigecycline. tetracycline
contig00888 1 1443 tolC 0/0 97.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 3746 4549 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00010 2910 3746 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00003 6574 7707 (Bla)AmpC2_Ecoli 0/0 100 98.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00291 575 1435 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00063 839 2740 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00010 4610 5425 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00489 742 1947 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig01148 43 552 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00010 3746 4549 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00010 2910 3746 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00003 6574 7707 (Bla)AmpC2_Ecoli 0/0 100 98.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00291 575 1435 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00063 839 2740 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00010 4610 5425 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00489 742 1947 (Tet)tetB 0/0 100 99.7 AB089594:1-1206 (Tet)tetB NA
contig01148 43 552 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01023 218 1298 ACRA 0/0 90.5 99.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00282 1233 2390 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00010 3746 4573 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00010 2910 3746 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig01472 115 936 BACA 0/0 100.0 99.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00392 909 1631 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00003 6574 7707 BLAEC 0/0 100.0 99.7 MEG_1276 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00060 1905 2603 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00060 2600 3973 CPXAR 0/0 100.0 99.8 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00030 916 1548 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01148 43 552 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01048 1 1093 EMRD 0/0 91.8 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00673 515 1655 EMRK 0/0 98.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00314 1 1212 MDTA 0/0 97.1 99.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00503 89 1246 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00131 1287 2513 MDTG 0/0 100.0 99.8 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig02237 200 529 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00200 532 1764 MDTM 0/0 100.0 97.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00473 617 949 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00063 839 2740 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00048 3214 4083 ROBA 0/0 100.0 100.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00010 4610 5425 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00489 742 1947 TETB 0/0 100.0 100.0 MEG_7052 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETB NA
Home-KAT_023A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01332 257 1117 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig01365 467 1040 dfrA7_5 3/4 100 98.8 AJ419170 dfrA7 Trimethoprim
contig00837 778 1593 sul2_3 0/0 100 100.0 HQ840942 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01835 1 773 bacA 0/0 94.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00394 1117 2490 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00092 445 1077 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01365 567 1040 dfrA7 0/0 100.0 100.0 FJ854362:2338-2812 dfrA7 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00069 2755 3927 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00069 1200 2738 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00990 342 1397 emrK 0/0 100.0 100.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00069 4054 4584 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00098 2245 3888 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00359 535 1728 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00025 3715 4848 Escherichia_coli_ampC 0/0 100.0 100.0 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00684 399 1556 Escherichia_coli_ampH 0/0 100.0 100.0 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig01558 25 639 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00270 1 718 gadW 0/0 98.5 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01283 371 1195 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00074 4084 4497 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00108 2588 2971 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig01407 1 1104 mdtE 0/0 95.3 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00229 1145 2371 mdtG 0/0 100.0 99.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00065 919 2385 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00222 1329 1805 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00837 778 1593 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig01332 257 1117 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00025 3715 4848 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00684 399 1556 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01332 257 1117 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00837 778 1593 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig01365 567 1040 (Tmt)dhfr7 0/0 100 100.0 X58425:594-1067 (Tmt)dhfr7 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00025 3715 4848 (Bla)AmpC2_Ecoli 0/0 100 100.0 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00684 399 1556 (Bla)ampH_Ecoli 0/0 100 100.0 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig01332 257 1117 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00837 778 1593 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig01365 567 1040 (Tmt)dhfr7 0/0 100 100.0 X58425:594-1067 (Tmt)dhfr7 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00359 535 1728 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00025 3715 4848 AMPC 0/0 100.0 100.0 MEG_728 Drugs:betalactams:Class_C_betalactamases:AMPC NA
contig00684 399 1556 AMPH 0/0 100.0 100.0 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig01835 1 773 BACA 0/0 94.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00394 422 1120 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00394 1117 2490 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00092 445 1077 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig01365 567 1040 DFRA 0/0 100.0 100.0 MEG_2548 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00069 2755 3927 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00069 1200 2738 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00990 342 1471 EMRK 0/0 97.1 100.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00069 4054 4584 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00098 2245 3888 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00270 1 718 GADW 0/0 98.5 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01283 371 1195 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00074 4084 4497 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00108 2582 2971 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00108 2134 2568 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig01407 1 1104 MDTE 0/0 95.3 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00229 1145 2371 MDTG 0/0 100.0 100.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00861 1 324 MDTI 0/0 98.2 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00561 251 1624 MDTK 0/0 100.0 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00065 919 2385 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00222 1329 1805 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00289 1516 1839 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00837 778 1593 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Home-KAT_039B
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01083 173 655 dfrA14_5 0/0 100 99.6 DQ388123 dfrA14 Trimethoprim
contig00834 192 1007 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00026 2130 2792 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00657 400 1173 bacA 0/0 94.2 99.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig01083 173 655 dfrA14 0/0 100.0 99.8 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00546 278 1275 emrK 0/0 94.5 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00024 517 2160 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00207 7 1755 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00683 159 1127 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00834 192 1007 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00834 192 1007 (Sul)sul2 0/0 100 100 EU360945:1617-2432 (Sul)sul2 NA
contig01083 173 646 (Tmt)dfrA14 0/0 100 100 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00834 192 1007 (Sul)sul2 0/0 100 100 EU360945:1617-2432 (Sul)sul2 NA
contig01083 173 646 (Tmt)dfrA14 0/0 100 100 GU726917:72-545 (Tmt)dfrA14 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00026 2130 2792 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00657 400 1173 BACA 0/0 94.2 99.0 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig01083 173 646 DFRA 0/0 100.0 99.8 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00024 517 2160 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01274 422 855 MARR 0/0 99.8 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig02042 245 610 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00129 1 1242 MDTK 0/0 90.4 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00207 7 1755 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00683 159 1127 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00834 192 1007 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Hosp-BWE_048
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 1975 2811 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00007 3161 3643 dfrA14_5 0/0 100 99.8 DQ388123 dfrA14 Trimethoprim
contig00007 4243 5058 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 1975 2811 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00559 529 1161 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00007 3161 3643 dfrA14 0/0 100.0 100.0 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00454 523 1578 emrK 0/0 100.0 100.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00711 197 1355 Escherichia_coli_acrA 0/0 97.1 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig01008 192 1016 gadX 0/0 100.0 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00232 495 908 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00031 1857 3014 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00004 3545 5293 msbA 0/0 100.0 98.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00007 4243 5058 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00002 4507 5994 tolC 0/0 100.0 100.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 1975 2811 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00007 4243 5058 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00007 3161 3634 (Tmt)dfrA14 0/0 100 99.8 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00007 1975 2811 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00007 4243 5058 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00007 3161 3634 (Tmt)dfrA14 0/0 100 99.8 GU726917:72-545 (Tmt)dfrA14 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00711 197 1355 ACRA 0/0 97.1 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00007 1975 2811 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00559 529 1161 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00007 3161 3634 DFRA 0/0 100.0 100.0 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00454 523 1652 EMRK 0/0 97.1 100.0 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01008 192 1016 GADX 0/0 100.0 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00232 495 908 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00031 1857 3014 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig02252 317 624 MDTI 0/0 93.3 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig02252 1 330 MDTJ 0/0 90.2 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00004 3545 5293 MSBA 0/0 100.0 98.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00007 4243 5058 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Hosp-BWE_054
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1697 2485 aadA5_1 0/0 100 100.0 AF137361 aadA5 Streptomycin
contig00354 843 1646 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00354 7 843 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00971 109 969 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00268 2616 3089 dfrA17_1 0/0 100 100.0 FJ460238 dfrA17 Trimethoprim
contig00356 2699 3931 mdf(A)_1 0/0 100 97.8 Y08743 mdf(A)
contig00268 311 1177 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
contig00354 1707 2522 sul2_3 0/0 100 100.0 HQ840942 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1697 2485 aadA5 0/0 100.0 100.0 AF137361:63-852 aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae aminoglycoside
contig00994 197 1354 acrE 0/0 100.0 98.8 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig01328 136 758 acrS 0/0 94.0 98.6 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00354 843 1646 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00354 7 843 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00050 8075 8894 bacA 0/0 99.8 98.3 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00024 2920 3641 baeR 0/0 99.9 97.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00024 1520 2923 baeS 0/0 100.0 90.6 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00715 931 2304 cpxA 0/0 100.0 98.5 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00248 1517 2149 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00268 2616 3089 dfrA17 0/0 100.0 100.0 DQ838665:0-474 dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00375 2087 3625 emrB 0/0 100.0 98.4 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00052 1466 2521 emrK 0/0 100.0 97.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00765 435 965 emrR 0/0 100.0 98.5 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00052 1 1466 emrY 0/0 95.3 97.5 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00315 2466 4109 eptA 0/0 100.0 91.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00094 6235 7428 Escherichia_coli_acrA 0/0 100.0 99.1 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00011 1262 2395 Escherichia_coli_ampC 0/0 100.0 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00190 4295 5452 Escherichia_coli_ampH 0/0 100.0 97.1 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00356 2699 3931 Escherichia_coli_mdfA 0/0 100.0 96.3 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00052 3045 3659 evgA 0/0 100.0 98.9 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00052 3664 7257 evgS 0/0 100.0 96.3 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00596 1558 2286 gadW 0/0 100.0 99.9 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00596 365 1189 gadX 0/0 100.0 93.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00593 2426 2839 H-NS 0/0 100.0 99.3 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00022 1539 1922 marA 0/0 100.0 99.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00829 177 1424 mdtA 0/0 100.0 95.8 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00251 2925 4082 mdtE 0/0 100.0 98.3 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00251 1 2900 mdtF 0/0 93.1 97.0 U00096:3660413-3663527 MdtF is the multidrug inner membrane transporter for the MdtEF-TolC efflux complex. fluoroquinolone, macrolide, penam
contig00623 743 1969 mdtG 0/0 100.0 98.4 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00032 9316 10524 mdtH 0/0 100.0 98.3 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00341 1 1194 mdtM 0/0 96.8 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00123 395 1426 mdtN 0/0 100.0 96.3 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00123 1426 3477 mdtO 0/0 100.0 97.2 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00123 3474 4940 mdtP 0/0 100.0 98.1 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00342 2197 3165 pmrF 0/0 100.0 97.5 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00268 311 1150 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00354 1707 2522 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00971 109 969 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00069 6913 8400 tolC 0/0 100.0 98.2 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig01114 62 1183 ugd 0/0 96.1 99.9 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00116 6212 7855 yojI 0/0 100.0 97.3 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1697 2485 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00354 843 1646 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00354 7 843 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00011 1262 2395 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00190 4295 5452 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00971 109 969 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00150 4681 6582 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00268 311 1150 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00354 1707 2522 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00268 2616 3089 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00268 1697 2485 (AGly)aadA5 0/0 100 100.0 AF137361:64-852 (AGly)aadA5 NA
contig00354 843 1646 (AGly)strA 0/0 100 99.9 AB366441:22458-23261 (AGly)strA NA
contig00354 7 843 (AGly)strB 0/0 100 100.0 FJ474091:264-1100 (AGly)strB NA
contig00011 1262 2395 (Bla)AmpC2_Ecoli 0/0 100 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00190 4295 5452 (Bla)ampH_Ecoli 0/0 100 97.1 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00971 109 969 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00150 4681 6582 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00268 311 1150 (Sul)sul1 0/0 100 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00354 1707 2522 (Sul)sul2 0/0 100 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00268 2616 3089 (Tmt)dfrA17 0/0 100 100.0 AB126604:98-571 (Tmt)dfrA17 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00094 6235 7428 ACRA 0/0 100.0 99.1 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00994 197 1354 ACRE 0/0 100.0 98.8 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig01328 136 758 ACRS 0/0 94.0 98.6 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00190 4295 5452 AMPH 0/0 100.0 97.1 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00268 1697 2485 ANT3-DPRIME 0/0 100.0 100.0 MEG_928 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00354 843 1670 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00354 7 843 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00402 1830 3682 ASMA 0/0 100.0 97.8 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00050 8075 8894 BACA 0/0 99.8 98.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00024 2920 3641 BAER 0/0 99.9 97.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00024 1520 2923 BAES 0/0 100.0 90.6 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00688 1 1184 BCR 0/0 99.4 96.6 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00011 1262 2395 BLAEC 0/0 100.0 99.5 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00715 236 934 CPXAR 0/0 100.0 97.8 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00715 931 2304 CPXAR 0/0 100.0 98.9 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00248 1517 2149 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00268 2616 3089 DFRA 0/0 100.0 100.0 MEG_2547 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00375 2087 3625 EMRB 0/0 100.0 98.4 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00482 2419 3495 EMRD 0/0 90.4 97.4 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00052 1466 2629 EMRK 0/0 100.0 97.4 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00765 435 965 EMRR 0/0 100.0 98.5 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00052 1 1466 EMRY 0/0 95.3 97.6 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00315 2466 4109 EPTA 0/0 100.0 91.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00052 3664 7257 EVGS 0/0 100.0 97.4 MEG_2869 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00596 1558 2286 GADW 0/0 100.0 99.9 MEG_3082 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00596 365 1189 GADX 0/0 100.0 93.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00593 2426 2839 HNS 0/0 100.0 99.3 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00022 1539 1928 MARA 0/0 100.0 99.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00022 1943 2377 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00356 2699 3931 MDFA 0/0 100.0 97.9 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00829 177 1424 MDTA 0/0 100.0 95.8 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00251 2925 4082 MDTE 0/0 100.0 98.3 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00251 1 2900 MDTF 0/0 93.1 97.0 MEG_3752 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTF NA
contig00623 743 1969 MDTG 0/0 100.0 98.5 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00032 9316 10524 MDTH 0/0 100.0 98.3 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00771 683 1012 MDTI 0/0 100.0 98.8 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00771 331 696 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00330 1615 2987 MDTK 0/0 99.9 97.7 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00341 1 1194 MDTM 0/0 96.8 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00123 395 1426 MDTN 0/0 100.0 96.3 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00123 1426 3477 MDTO 0/0 100.0 97.2 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00123 3474 4940 MDTP 0/0 100.0 98.1 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00150 4681 6582 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00342 2197 3165 PMRF 0/0 100.0 97.5 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00101 1538 2407 ROBA 0/0 100.0 99.7 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00412 1049 1371 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00268 184 1151 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00354 1707 2522 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00971 91 1336 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig01114 62 1183 UGD 0/0 96.1 99.9 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00116 6212 7855 YOGI 0/0 100.0 97.3 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Hosp-BWE_076
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 2919 3755 aph(6)-Id_1 0/0 100 99.9 M28829 aph(6)-Id Streptomycin
contig00800 344 1204 blaTEM-1B_1 0/0 100 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00931 42 551 dfrA8_1 0/0 100 100.0 U10186 dfrA8 Trimethoprim
contig00293 360 1175 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 2919 3755 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00233 15 836 bacA 0/0 100.0 100.0 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00058 620 1252 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00931 42 551 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig00166 544 2082 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig01094 376 906 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00108 105 1748 eptA 0/0 100.0 99.9 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00104 986 1600 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01233 230 972 gadX 0/0 90.1 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00135 1623 2006 marA 0/0 100.0 100.0 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00010 2447 3604 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00287 1329 1805 mphB 0/0 100.0 98.3 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00301 323 1291 pmrF 0/0 100.0 100.0 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00293 360 1175 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00800 344 1204 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 2919 3755 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00800 344 1204 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00293 360 1175 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00931 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 2919 3755 (AGly)strB 0/0 100 99.9 FJ474091:264-1100 (AGly)strB NA
contig00800 344 1204 (Bla)blaTEM-105 0/0 100 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00293 360 1175 (Sul)sul2 0/0 100 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00931 42 551 (Tmt)dfrA8 0/0 100 100.0 U10186:711-1220 (Tmt)dfrA8 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00014 2919 3755 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00233 15 836 BACA 0/0 100.0 100.0 MEG_1190 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00058 620 1252 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00931 42 551 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00166 544 2082 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig01094 376 906 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00108 105 1748 EPTA 0/0 100.0 99.9 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01233 230 972 GADX 0/0 90.1 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00135 1617 2006 MARA 0/0 100.0 100.0 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00135 1169 1603 MARR 0/0 100.0 100.0 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00010 2447 3604 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00287 1329 1805 MPHB 0/0 100.0 98.3 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00301 323 1291 PMRF 0/0 100.0 100.0 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00293 360 1175 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Hosp-BWE_106
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00170 804 1606 aph(3’’)-Ib_2 0/0 99.9 100.0 AF024602 aph(3’’)-Ib Streptomycin
contig00170 1 804 aph(6)-Id_1 0/0 96.1 100.0 M28829 aph(6)-Id Streptomycin
contig01367 1 819 blaTEM-1C_1 0/0 95.1 100.0 FJ560503 blaTEM-1C Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00361 805 1278 dfrA1_10 0/0 100.0 99.8 AF203818 dfrA1 Trimethoprim
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00170 804 1607 APH(3’’)-Ib 0/0 100.0 99.9 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00170 1 804 APH(6)-Id 0/0 96.1 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00361 805 1278 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00061 1010 2526 emrB 0/0 98.6 98.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00537 291 1284 emrK 0/0 94.1 97.8 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00006 1 1613 eptA 0/0 98.1 98.1 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig02880 68 467 H-NS 0/0 96.6 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00410 357 831 mphB 0/0 99.6 96.6 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig01367 1 819 TEM-1 0/0 95.1 100.0 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00170 804 1607 (AGly)strA 0/0 100.0 100.0 AB366441:22458-23261 (AGly)strA NA
contig00170 1 804 (AGly)strB 0/0 96.1 100.0 FJ474091:264-1100 (AGly)strB NA
contig01367 1 819 (Bla)blaTEM-135 0/0 95.1 99.9 JQ060998:1-861 (Bla)blaTEM-135 NA
contig00361 805 1278 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00170 804 1607 (AGly)strA 0/0 100.0 100.0 AB366441:22458-23261 (AGly)strA NA
contig00170 1 804 (AGly)strB 0/0 96.1 100.0 FJ474091:264-1100 (AGly)strB NA
contig01367 1 819 (Bla)blaTEM-135 0/0 95.1 99.9 JQ060998:1-861 (Bla)blaTEM-135 NA
contig00361 805 1278 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00170 804 1631 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00170 1 804 APH6 0/0 96.1 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig01091 176 874 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00361 805 1278 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00061 1010 2526 EMRB 0/0 98.6 98.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00006 1 1613 EPTA 0/0 98.1 98.1 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig02880 68 467 HNS 0/0 96.6 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig01411 60 494 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00410 357 831 MPHB 0/0 99.6 96.6 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00416 730 1052 SOXS 0/0 99.7 97.5 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig01367 1 819 TEM 0/0 95.1 100.0 MEG_6740 Drugs:betalactams:Class_A_betalactamases:TEM NA
Hosp-HIM_031
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00913 364 1166 aph(3’’)-Ib_2 0/0 99.9 100 AF024602 aph(3’’)-Ib Streptomycin
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00136 1 2909 acrB 0/0 92.3 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00913 364 1167 APH(3’’)-Ib 0/0 100.0 99.9 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig01222 252 884 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00870 292 1347 emrK 0/0 100.0 98.3 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01441 189 719 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00042 2402 3939 eptA 0/0 93.5 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00047 2491 3684 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00002 2332 3489 Escherichia_coli_ampH 0/0 100.0 98.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00276 420 1034 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01599 17 841 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig02908 16 429 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00073 561 1718 mdtE 0/0 100.0 99.6 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00396 89 2003 mdtO 0/0 93.3 98.1 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00286 1118 1594 mphB 0/0 100.0 98.1 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00913 364 1167 (AGly)strA 0/0 100 100.0 AB366441:22458-23261 (AGly)strA NA
contig00002 2332 3489 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00913 364 1167 (AGly)strA 0/0 100 100.0 AB366441:22458-23261 (AGly)strA NA
contig00002 2332 3489 (Bla)ampH_Ecoli 0/0 100 98.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00047 2491 3684 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00136 1 2909 ACRB 0/0 92.3 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 2332 3489 AMPH 0/0 100.0 98.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00913 364 1191 APH3-DPRIME 0/0 100.0 99.9 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00520 873 1571 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig01222 252 884 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00993 1 1097 EMRD 0/0 92.1 99.9 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00870 292 1377 EMRK 0/0 93.3 98.3 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01441 189 719 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00042 2402 3939 EPTA 0/0 93.5 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01599 17 841 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig02908 16 429 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00073 561 1718 MDTE 0/0 100.0 99.6 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00928 435 764 MDTI 0/0 100.0 99.1 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00928 751 1116 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00396 89 2003 MDTO 0/0 93.3 98.1 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00286 1118 1594 MPHB 0/0 100.0 98.1 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00262 422 1291 ROBA 0/0 100.0 99.4 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00141 1735 2058 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
Hosp-HIM_045
Resfinder
## [1] "No antibiotic resitance genes from Resfinder database were found"
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00964 197 1354 acrE 0/0 100.0 99.0 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00396 2471 3133 acrS 0/0 100.0 98.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00079 2838 3560 baeR 0/0 100.0 100.0 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00079 1438 2841 baeS 0/0 100.0 100.0 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00625 987 2360 cpxA 0/0 100.0 99.0 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00722 1032 1664 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00076 3936 5108 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00076 2381 3919 emrB 0/0 100.0 100.0 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00541 1231 2286 emrK 0/0 100.0 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00076 5235 5765 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00109 1794 3437 eptA 0/0 100.0 100.0 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00611 335 1528 Escherichia_coli_acrA 0/0 100.0 99.9 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00003 7904 9037 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00036 2502 3659 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00186 21 635 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00186 640 4233 evgS 0/0 100.0 99.7 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00243 1181 1909 gadW 0/0 100.0 94.7 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00243 1 813 gadX 0/0 98.5 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00241 1494 1907 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00496 1997 2380 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00490 1305 2462 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00218 1521 2729 mdtH 0/0 100.0 100.0 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00709 414 1646 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00411 395 1426 mdtN 0/0 100.0 100.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00437 90 1556 mdtP 0/0 100.0 100.0 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00484 485 2233 msbA 0/0 100.0 100.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00230 1130 2296 ugd 0/0 100.0 96.7 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00477 1176 2819 yojI 0/0 100.0 100.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 7904 9037 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00036 2502 3659 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00358 1082 2983 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00003 7904 9037 (Bla)AmpC2_Ecoli 0/0 100 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00036 2502 3659 (Bla)ampH_Ecoli 0/0 100 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00358 1082 2983 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 100.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00611 335 1528 ACRA 0/0 100.0 99.9 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00964 197 1354 ACRE 0/0 100.0 99.0 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00396 2471 3133 ACRS 0/0 100.0 98.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00036 2502 3659 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00079 2838 3560 BAER 0/0 100.0 100.0 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00079 1438 2841 BAES 0/0 100.0 100.0 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00734 817 2007 BCR 0/0 100.0 100.0 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00003 7904 9037 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00625 292 990 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00625 987 2360 CPXAR 0/0 100.0 100.0 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00722 1032 1664 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00076 3936 5108 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00076 2381 3919 EMRB 0/0 100.0 100.0 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00465 1534 2724 EMRD 0/0 100.0 100.0 MEG_2729 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRD NA
contig00541 1231 2394 EMRK 0/0 100.0 99.9 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00076 5235 5765 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00109 1794 3437 EPTA 0/0 100.0 100.0 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00186 640 4233 EVGS 0/0 100.0 99.7 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00243 1181 1909 GADW 0/0 100.0 100.0 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00243 1 813 GADX 0/0 98.5 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00241 1494 1907 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00496 1991 2380 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00496 1543 1977 MARR 0/0 100.0 97.5 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00490 1305 2462 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00218 1521 2729 MDTH 0/0 100.0 100.0 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00687 1415 1744 MDTI 0/0 100.0 100.0 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00687 1063 1428 MDTJ 0/0 100.0 99.5 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00568 1275 2581 MDTK 0/0 95.1 100.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00709 414 1646 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00411 395 1426 MDTN 0/0 100.0 100.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00437 90 1556 MDTP 0/0 100.0 100.0 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00484 485 2233 MSBA 0/0 100.0 100.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00358 1082 2983 PBP2 0/0 100.0 100.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00161 3743 4612 ROBA 0/0 100.0 99.0 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00394 2898 3220 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00230 1130 2296 UGD 0/0 100.0 96.7 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00477 1176 2819 YOGI 0/0 100.0 100.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Hosp-HIM_048
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 5855 6328 dfrA1_10 0/0 100 99.8 AF203818 dfrA1 Trimethoprim
contig00005 3627 4493 sul1_5 0/0 100 99.9 EU780013 sul1 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01894 36 814 bacA 0/0 94.8 98.6 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00722 578 1210 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00005 5855 6328 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00032 1997 3052 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig01432 50 580 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00032 459 1997 emrY 0/0 100.0 98.8 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00323 1140 2333 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00010 4248 5381 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00024 430 1587 Escherichia_coli_ampH 0/0 100.0 98.9 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00032 3576 4190 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00271 1282 2010 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00271 90 914 gadX 0/0 100.0 97.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01122 299 682 marA 0/0 100.0 99.2 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00075 1226 2383 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00563 191 1423 mdtM 0/0 100.0 96.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00212 1333 1809 mphB 0/0 100.0 97.9 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00154 47 1795 msbA 0/0 100.0 99.3 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00005 3627 4466 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 4971 5772 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00010 4248 5381 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00024 430 1587 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00199 931 2832 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00005 3627 4466 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig01684 45 695 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00005 5855 6328 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00005 4971 5772 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00010 4248 5381 (Bla)AmpC2_Ecoli 0/0 100.0 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00024 430 1587 (Bla)ampH_Ecoli 0/0 100.0 98.9 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00199 931 2832 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.4 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00005 3627 4466 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig01684 45 695 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00005 5855 6328 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00323 1140 2333 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00024 430 1587 AMPH 0/0 100.0 98.9 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00005 4971 5772 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig01894 36 814 BACA 0/0 94.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00010 4248 5381 BLAEC 0/0 100.0 99.2 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00564 869 1567 CPXAR 0/0 100.0 100.0 MEG_2122 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00722 578 1210 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00005 5855 6328 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00032 1997 3160 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig01432 50 580 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00032 459 1997 EMRY 0/0 100.0 98.9 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00271 1282 2010 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00271 90 914 GADX 0/0 100.0 97.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01122 293 682 MARA 0/0 100.0 99.2 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00075 1226 2383 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00170 1611 2984 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00563 191 1423 MDTM 0/0 100.0 96.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00212 1333 1809 MPHB 0/0 100.0 97.9 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00154 47 1795 MSBA 0/0 100.0 99.3 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00199 931 2832 PBP2 0/0 100.0 99.4 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00071 2328 3197 ROBA 0/0 100.0 99.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00168 761 1084 SOXS 0/0 100.0 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00005 3500 4467 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
Hosp-HIM_068
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00047 13624 14856 mdf(A)_1 0/0 100 99.1 Y08743 mdf(A) NA
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 17630 20779 acrB 0/0 100.0 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00288 1 2814 acrD 0/0 90.4 98.8 AP009048.1:2586250-2589364 AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. aminoglycoside
contig00033 8238 9395 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00033 5122 8226 acrF 0/0 100.0 99.0 U00096:3415032-3418137 AcrF is a inner membrane transporter similar to AcrB. cephalosporin, cephamycin, fluoroquinolone, penam
contig00033 9794 10456 acrS 0/0 100.0 98.8 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00723 93 912 bacA 0/0 99.8 98.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00058 2306 3028 baeR 0/0 100.0 98.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00058 906 2309 baeS 0/0 100.0 99.9 AP009048:2165012-2166416 BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. aminocoumarin, aminoglycoside
contig00327 3587 4960 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00260 2156 2788 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00427 478 1650 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00008 8335 9390 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00427 1777 2307 emrR 0/0 100.0 100.0 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00008 6797 8335 emrY 0/0 100.0 98.7 D78168:1591-3130 emrY is a multidrug transport that moves substrates across the inner membrane of the Gram-negative E. coli. It is a homolog of emrB. tetracycline
contig00112 2402 4045 eptA 0/0 100.0 99.3 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00011 20802 21995 Escherichia_coli_acrA 0/0 100.0 99.6 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00040 3213 4346 Escherichia_coli_ampC 0/0 100.0 97.7 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00241 3891 5195 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00107 5238 6395 Escherichia_coli_ampH 0/0 100.0 99.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00047 13624 14856 Escherichia_coli_mdfA 0/0 100.0 97.6 JQ394987:0-1233 Multidrug efflux pump in E. coli. This multidrug efflux system was originally identified as the Cmr/CmlA chloramphenicol exporter. benzalkonium_chloride, rhodamine, tetracycline
contig00008 9914 10528 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00008 10533 14126 evgS 0/0 100.0 99.4 U00096:2484373-2487967 EvgS is a sensor protein that phosphorylates the regulatory protein EvgA. evgS corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. fluoroquinolone, macrolide, penam, tetracycline
contig00365 1568 2296 gadW 0/0 100.0 94.4 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00365 376 1200 gadX 0/0 100.0 97.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00448 25 438 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00367 3827 4483 kdpE 0/0 96.9 97.3 U00096.3:721733-721055 kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. aminoglycoside
contig00082 1627 2010 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00295 4093 5340 mdtA 0/0 100.0 98.1 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00295 971 4093 mdtB 0/0 100.0 98.4 U00096:2155262-2158385 MdtB is a transporter that forms a heteromultimer complex with MdtC to form a multidrug transporter. MdtBC is part of the MdtABC-TolC efflux complex. aminocoumarin
contig00458 1236 2393 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00164 6425 7651 mdtG 0/0 100.0 98.9 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00083 9270 10478 mdtH 0/0 100.0 98.5 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00390 2061 3293 mdtM 0/0 100.0 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00360 3536 4567 mdtN 0/0 100.0 98.0 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00301 1 1984 mdtO 0/0 96.7 98.3 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00301 1981 3447 mdtP 0/0 100.0 98.3 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00037 4591 5065 mphB 0/0 99.6 97.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00034 4736 6484 msbA 0/0 100.0 99.3 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00174 3501 4469 pmrF 0/0 100.0 99.9 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00122 3476 4963 tolC 0/0 100.0 98.4 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00309 231 1397 ugd 0/0 100.0 95.5 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
contig00446 1273 2916 yojI 0/0 100.0 98.0 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00241 3891 5195 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00040 3213 4346 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00107 5238 6395 (Bla)ampH_Ecoli 0/0 100 99.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00027 10413 12314 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00241 3891 5195 (Bla)AmpC1_Ecoli 0/0 100 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00040 3213 4346 (Bla)AmpC2_Ecoli 0/0 100 97.7 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00107 5238 6395 (Bla)ampH_Ecoli 0/0 100 99.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00027 10413 12314 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00011 20802 21995 ACRA 0/0 100.0 99.6 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00011 17630 20779 ACRB 0/0 100.0 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00288 1 2814 ACRD 0/0 90.4 98.8 MEG_407 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ACRD NA
contig00033 8238 9395 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00033 5122 8226 ACRF 0/0 100.0 99.0 MEG_409 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRF NA
contig00033 9794 10456 ACRS 0/0 100.0 98.8 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00107 5238 6395 AMPH 0/0 100.0 99.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00158 5471 7323 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00723 93 912 BACA 0/0 99.8 98.8 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00058 2306 3028 BAER 0/0 100.0 98.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00058 906 2309 BAES 0/0 100.0 99.9 MEG_1193 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAES NA
contig00435 487 1677 BCR 0/0 100.0 97.9 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00040 3213 4346 BLAEC 0/0 100.0 99.9 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00327 2892 3590 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00327 3587 4960 CPXAR 0/0 100.0 99.5 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00260 2156 2788 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00427 478 1650 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00008 8335 9498 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00427 1777 2307 EMRR 0/0 100.0 100.0 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00008 6797 8335 EMRY 0/0 100.0 98.8 MEG_2736 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRY NA
contig00112 2402 4045 EPTA 0/0 100.0 99.3 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig00008 10533 14126 EVGS 0/0 100.0 99.4 MEG_2870 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EVGS NA
contig00365 1568 2296 GADW 0/0 100.0 98.6 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00365 376 1200 GADX 0/0 100.0 97.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00448 25 438 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00367 3827 4483 KDPE 0/0 96.9 97.3 MEG_3448 Drugs:Aminoglycosides:Aminoglycoside_efflux_pumps:KDPE NA
contig00082 1621 2010 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00082 1173 1607 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00047 13624 14856 MDFA 0/0 100.0 99.2 MEG_3737 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDFA NA
contig00295 4093 5340 MDTA 0/0 100.0 98.1 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00295 971 4093 MDTB 0/0 100.0 98.4 MEG_3747 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTB NA
contig00458 1236 2393 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00164 6425 7651 MDTG 0/0 100.0 99.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00083 9270 10478 MDTH 0/0 100.0 98.5 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig00291 5063 5392 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00291 4711 5076 MDTJ 0/0 100.0 98.9 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00357 1653 3026 MDTK 0/0 100.0 99.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00390 2061 3293 MDTM 0/0 100.0 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00360 3536 4567 MDTN 0/0 100.0 98.0 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00301 1 1984 MDTO 0/0 96.7 98.3 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00301 1981 3447 MDTP 0/0 100.0 98.3 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig00037 4591 5065 MPHB 0/0 99.6 97.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00034 4736 6484 MSBA 0/0 100.0 99.3 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00027 10413 12314 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00241 3891 5195 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00174 3501 4469 PMRF 0/0 100.0 99.9 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00063 11897 12766 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00046 8027 8350 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00309 231 1397 UGD 0/0 100.0 95.5 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
contig00446 1273 2916 YOGI 0/0 100.0 98.0 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Hosp-HIM_071A
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 2698 3534 aph(6)-Id_1 0/0 100 100.0 M28829 aph(6)-Id Streptomycin
contig00021 3884 4366 dfrA14_5 0/0 100 99.8 DQ388123 dfrA14 Trimethoprim
contig00021 4966 5781 sul2_2 0/0 100 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01133 197 1328 acrE 0/0 97.8 98.5 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig01150 622 1284 acrS 0/0 100.0 97.9 U00096:3413465-3412802 AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00021 2698 3534 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig01389 93 912 bacA 0/0 99.8 97.1 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00053 3396 4118 baeR 0/0 100.0 96.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00353 1924 2556 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00021 3884 4366 dfrA14 0/0 100.0 100.0 EU780012:2162-2645 dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli diaminopyrimidine
contig00673 336 1469 Escherichia_coli_ampC 0/0 100.0 97.9 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00008 6303 7607 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 95.9 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00987 403 1495 Escherichia_coli_ampH 0/0 94.4 99.3 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00647 16 348 Escherichia_coli_emrE 0/0 100.0 91.6 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig01283 298 912 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00638 1 713 gadW 0/0 97.8 96.6 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01435 192 1016 gadX 0/0 100.0 93.9 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig01367 300 683 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00614 154 1401 mdtA 0/0 100.0 96.9 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00112 571 1728 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00358 720 1946 mdtG 0/0 100.0 98.0 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig01088 7 1239 mdtM 0/0 100.0 96.3 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00138 449 1480 mdtN 0/0 100.0 97.7 AP009048.1:4307588-4306556 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. acridine_dye, nucleoside
contig00138 1480 3531 mdtO 0/0 100.0 97.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00584 810 1284 mphB 0/0 99.6 97.0 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00404 833 1801 pmrF 0/0 100.0 96.3 U00096:2367070-2368039 PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. peptide
contig00021 4966 5781 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00018 2861 4348 tolC 0/0 100.0 98.3 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
contig00633 441 1945 yojI 0/0 91.5 97.9 U00096.3:2308615-2306971 YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 2698 3534 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00008 6303 7607 (Bla)AmpC1_Ecoli 0/0 100.0 95.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00673 336 1469 (Bla)AmpC2_Ecoli 0/0 100.0 97.9 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00987 403 1495 (Bla)ampH_Ecoli 0/0 94.4 99.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00145 105 2006 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00021 4966 5781 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00021 3884 4357 (Tmt)dfrA14 0/0 100.0 99.8 GU726917:72-545 (Tmt)dfrA14 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00021 2698 3534 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00008 6303 7607 (Bla)AmpC1_Ecoli 0/0 100.0 95.9 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00673 336 1469 (Bla)AmpC2_Ecoli 0/0 100.0 97.9 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00987 403 1495 (Bla)ampH_Ecoli 0/0 94.4 99.3 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00145 105 2006 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 98.7 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00021 4966 5781 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00021 3884 4357 (Tmt)dfrA14 0/0 100.0 99.8 GU726917:72-545 (Tmt)dfrA14 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig01133 197 1328 ACRE 0/0 97.8 98.5 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig01150 622 1284 ACRS 0/0 100.0 97.9 MEG_415 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:ACRS NA
contig00987 403 1495 AMPH 0/0 94.4 99.3 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00021 2698 3534 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig01389 93 912 BACA 0/0 99.8 97.3 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00053 3396 4118 BAER 0/0 100.0 96.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00348 730 1920 BCR 0/0 100.0 96.4 MEG_1210 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00673 336 1469 BLAEC 0/0 100.0 99.2 MEG_1275 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00788 370 1068 CPXAR 0/0 100.0 99.4 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00353 1924 2556 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00021 3884 4357 DFRA 0/0 100.0 100.0 MEG_2517 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig01444 36 1092 EMRK 0/0 90.8 96.3 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00638 1 713 GADW 0/0 97.8 96.8 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01435 192 1016 GADX 0/0 100.0 93.9 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig01367 294 683 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00614 154 1401 MDTA 0/0 100.0 96.9 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00112 571 1728 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00358 720 1946 MDTG 0/0 100.0 98.3 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig01088 7 1239 MDTM 0/0 100.0 96.3 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00138 449 1480 MDTN 0/0 100.0 97.7 MEG_3763 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTN NA
contig00138 1480 3531 MDTO 0/0 100.0 97.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00584 810 1284 MPHB 0/0 99.6 97.0 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00647 16 348 MVRC 0/0 100.0 91.6 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00145 105 2006 PBP2 0/0 100.0 98.7 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00008 6303 7607 PBP4B 0/0 100.0 95.9 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig00404 833 1801 PMRF 0/0 100.0 96.3 MEG_5801 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:PMRF NA
contig00096 2844 3713 ROBA 0/0 100.0 99.1 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig02282 379 673 SOXS 0/0 91.0 98.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00021 4966 5781 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00633 441 1945 YOGI 0/0 91.5 97.9 MEG_7842 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_ABC_efflux_pumps:YOGI NA
Hosp-HIM_82
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00071 775 1578 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00071 1 775 aph(6)-Id_1 0/0 92.6 100.0 M28829 aph(6)-Id Streptomycin
contig00111 1903 2376 dfrA5_1 0/0 100.0 99.8 X12868 dfrA5 Trimethoprim
contig00111 539 1405 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00071 1639 2454 sul2_2 0/0 100.0 100.0 AY034138 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00071 775 1578 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00071 2 775 APH(6)-Id 0/0 92.5 100.0 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00157 2163 2984 bacA 0/0 100.0 99.5 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00035 1242 1874 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00111 1903 2376 dfrA5 0/0 100.0 99.8 DQ278190:0-474 dfrA5 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00743 162 1334 emrA 0/0 100.0 100.0 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig01037 327 1279 emrK 0/0 90.2 99.9 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00259 1142 2335 Escherichia_coli_acrA 0/0 100.0 100.0 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00042 728 1861 Escherichia_coli_ampC 0/0 100.0 98.2 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00700 345 959 evgA 0/0 100.0 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00240 668 1396 gadW 0/0 100.0 94.5 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00419 821 1204 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00358 753 1985 mdtM 0/0 100.0 95.8 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00126 34 2085 mdtO 0/0 100.0 100.0 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig01213 692 1151 mphB 0/0 96.4 98.5 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00111 539 1378 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00071 1639 2454 sul2 0/0 100.0 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00527 358 1845 tolC 0/0 100.0 99.7 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00071 775 1578 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00071 1 775 (AGly)strB 0/0 92.6 100.0 FJ474091:264-1100 (AGly)strB NA
contig00042 728 1861 (Bla)AmpC2_Ecoli 0/0 100.0 98.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00111 539 1378 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00071 1639 2454 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00111 1903 2376 (Tmt)dfrA5 0/0 100.0 99.8 X12868:1306-1779 (Tmt)dfrA5 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00071 775 1578 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00071 1 775 (AGly)strB 0/0 92.6 100.0 FJ474091:264-1100 (AGly)strB NA
contig00042 728 1861 (Bla)AmpC2_Ecoli 0/0 100.0 98.2 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00111 539 1378 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00071 1639 2454 (Sul)sul2 0/0 100.0 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00111 1903 2376 (Tmt)dfrA5 0/0 100.0 99.8 X12868:1306-1779 (Tmt)dfrA5 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00259 1142 2335 ACRA 0/0 100.0 100.0 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00071 775 1602 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00071 1 775 APH6 0/0 92.6 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00371 365 2217 ASMA 0/0 100.0 98.3 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00157 2163 2984 BACA 0/0 100.0 99.5 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00042 728 1861 BLAEC 0/0 100.0 98.3 MEG_1278 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00409 707 1405 CPXAR 0/0 100.0 99.9 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00035 1242 1874 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00111 1903 2376 DFRA 0/0 100.0 99.8 MEG_2546 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00743 162 1334 EMRA 0/0 100.0 100.0 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00240 668 1396 GADW 0/0 100.0 99.9 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00419 815 1204 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00419 367 801 MARR 0/0 100.0 97.9 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00941 964 1293 MDTI 0/0 100.0 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00941 612 977 MDTJ 0/0 100.0 99.2 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00358 753 1985 MDTM 0/0 100.0 95.8 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00126 34 2085 MDTO 0/0 100.0 100.0 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig01213 692 1151 MPHB 0/0 96.4 98.5 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00452 1211 2024 ROBA 0/0 93.6 98.9 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00394 951 1273 SOXS 0/0 99.7 99.7 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00111 412 1379 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00071 1639 2454 SULII 0/0 100.0 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Hosp-KAT_009
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 4060 4863 aph(3’’)-Ib_5 0/0 100 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00039 3224 4060 aph(6)-Id_1 0/0 100 99.9 M28829 aph(6)-Id Streptomycin
contig00743 580 1089 dfrA8_1 0/0 100 100.0 U10186 dfrA8 Trimethoprim
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00445 1 1043 acrE 0/0 90.1 97.7 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00039 4060 4863 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00039 3224 4060 APH(6)-Id 0/0 100.0 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00776 653 1472 bacA 0/0 99.8 94.8 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00533 577 1298 baeR 0/0 99.9 96.1 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00401 1022 2395 cpxA 0/0 100.0 96.1 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00052 1936 2568 CRP 0/0 100.0 98.9 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00743 580 1089 dfrA8 0/0 100.0 100.0 KJ174469:710-1220 dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica diaminopyrimidine
contig01487 150 764 evgA 0/0 100.0 98.7 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00592 98 826 gadW 0/0 100.0 94.2 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig01565 162 950 gadX 0/0 95.6 95.7 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00705 970 1353 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00738 215 1462 mdtA 0/0 100.0 94.5 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig01017 324 1402 mdtE 0/0 93.2 97.2 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00980 1 1155 mdtM 0/0 93.7 97.8 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00491 1331 1805 mphB 0/0 99.6 96.8 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00422 422 2170 msbA 0/0 100.0 97.9 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig00826 1 737 sul2 0/0 90.3 100.0 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00387 351 1838 tolC 0/0 100.0 97.0 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 4060 4863 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00039 3224 4060 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00826 1 737 (Sul)sul2 0/0 90.3 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00743 580 1089 (Tmt)dfrA8 0/0 100.0 100.0 U10186:711-1220 (Tmt)dfrA8 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00039 4060 4863 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00039 3224 4060 (AGly)strB 0/0 100.0 99.9 FJ474091:264-1100 (AGly)strB NA
contig00826 1 737 (Sul)sul2 0/0 90.3 100.0 EU360945:1617-2432 (Sul)sul2 NA
contig00743 580 1089 (Tmt)dfrA8 0/0 100.0 100.0 U10186:711-1220 (Tmt)dfrA8 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00445 1 1043 ACRE 0/0 90.1 97.7 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00039 4060 4887 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00039 3224 4060 APH6 0/0 100.0 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00776 653 1472 BACA 0/0 99.8 95.0 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00533 577 1298 BAER 0/0 99.9 96.1 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00401 327 1025 CPXAR 0/0 100.0 99.0 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00401 1022 2395 CPXAR 0/0 100.0 96.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00052 1936 2568 CRP 0/0 100.0 98.9 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00743 580 1089 DFRA 0/0 100.0 100.0 MEG_2553 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00592 98 826 GADW 0/0 100.0 95.5 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig01565 162 950 GADX 0/0 95.6 95.7 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00705 970 1359 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00705 1374 1770 MARR 0/0 91.3 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00738 215 1462 MDTA 0/0 100.0 94.5 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig01017 324 1402 MDTE 0/0 93.2 97.2 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00328 243 572 MDTI 0/0 100.0 93.9 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig00404 651 2024 MDTK 0/0 100.0 97.0 MEG_3759 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MATE_efflux_pumps:MDTK NA
contig00980 1 1155 MDTM 0/0 93.7 97.8 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00491 1331 1805 MPHB 0/0 99.6 96.8 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00422 422 2170 MSBA 0/0 100.0 97.9 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00440 1427 2280 ROBA 0/0 98.2 97.2 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01213 763 1085 SOXS 0/0 99.7 97.2 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00826 1 737 SULII 0/0 90.3 100.0 MEG_6617 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Hosp-KAT_013
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00038 1270 2073 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00038 434 1270 aph(6)-Id_1 0/0 100.0 100.0 M28829 aph(6)-Id Streptomycin
contig00410 1 858 blaTEM-1B_1 0/0 99.7 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00090 2744 3217 dfrA1_10 0/0 100.0 99.8 AF203818 dfrA1 Trimethoprim
contig00090 516 1382 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00038 2134 2949 sul2_3 0/0 100.0 100.0 HQ840942 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00456 816 1973 acrE 0/0 100.0 98.9 U00096:3413863-3415021 AcrE is a membrane fusion protein similar to AcrA. cephalosporin, cephamycin, fluoroquinolone, penam
contig00038 1270 2073 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00038 434 1270 APH(6)-Id 0/0 100.0 99.9 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig00135 2152 2784 CRP 0/0 100.0 99.8 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00090 2744 3217 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00085 1551 2684 Escherichia_coli_ampC 0/0 100.0 97.3 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig02179 182 514 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00990 1 614 evgA 0/0 99.8 100.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00969 1 797 gadX 0/0 96.6 100.0 AP009048.1:3974604-3975429 GadX is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. fluoroquinolone, macrolide, penam
contig00148 816 1229 H-NS 0/0 100.0 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00060 2447 3604 mdtE 0/0 100.0 100.0 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00341 243 1454 mdtM 0/0 98.3 95.9 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00846 1 1446 mdtP 0/0 98.6 99.9 AP009048.1:4304509-4303042 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00090 516 1355 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00038 2134 2949 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00410 1 858 TEM-1 0/0 99.7 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00142 407 1573 ugd 0/0 100.0 97.4 U00096:2099613-2098446 PmrE is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin peptide
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1860 2661 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00038 1270 2073 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00038 434 1270 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00085 1551 2684 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00410 1 858 (Bla)blaTEM-105 0/0 99.7 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00090 516 1355 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00038 2134 2949 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig01088 10 660 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00090 2744 3217 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00090 1860 2661 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00038 1270 2073 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00038 434 1270 (AGly)strB 0/0 100.0 100.0 FJ474091:264-1100 (AGly)strB NA
contig00085 1551 2684 (Bla)AmpC2_Ecoli 0/0 100.0 97.3 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00410 1 858 (Bla)blaTEM-105 0/0 99.7 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00090 516 1355 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00038 2134 2949 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig01088 10 660 (Tet)tetR 0/0 100.0 100.0 HF545434:53576-54226 (Tet)tetR NA
contig00090 2744 3217 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00456 816 1973 ACRE 0/0 100.0 98.9 MEG_408 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRE NA
contig00090 1860 2661 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00038 1270 2097 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00038 434 1270 APH6 0/0 100.0 100.0 MEG_1086 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig00455 216 2068 ASMA 0/0 100.0 98.1 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00085 1551 2684 BLAEC 0/0 100.0 98.6 MEG_1282 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00581 520 1218 CPXAR 0/0 100.0 99.6 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00135 2152 2784 CRP 0/0 100.0 99.8 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00090 2744 3217 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00969 1 797 GADX 0/0 96.6 100.0 MEG_3083 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADX NA
contig00148 816 1229 HNS 0/0 100.0 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig02114 154 588 MARR 0/0 100.0 99.1 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00060 2447 3604 MDTE 0/0 100.0 100.0 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig02382 1 345 MDTJ 0/0 94.3 98.8 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00341 243 1454 MDTM 0/0 98.3 95.9 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00846 1 1446 MDTP 0/0 98.6 99.9 MEG_3765 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTP NA
contig02179 182 514 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00440 230 553 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00090 389 1356 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00038 2134 2949 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
contig00410 1 1225 TEM 0/0 96.6 99.3 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00142 407 1573 UGD 0/0 100.0 97.4 MEG_7328 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:UGD NA
Hosp-KAT_023
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00270 826 1629 aph(3’’)-Ib_5 0/0 100.0 100.0 AF321551 aph(3’’)-Ib Streptomycin
contig00270 1 826 aph(6)-Id_1 0/0 98.7 99.9 M28829 aph(6)-Id Streptomycin
contig00169 2410 2883 dfrA1_10 0/0 100.0 99.8 AF203818 dfrA1 Trimethoprim
contig00169 182 1048 sul1_5 0/0 100.0 99.9 EU780013 sul1 Sulfamethoxazole
contig00270 1690 2505 sul2_3 0/0 100.0 100.0 HQ840942 sul2 Sulfamethoxazole
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00004 5503 8652 acrB 0/0 100.0 99.0 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00270 826 1629 APH(3’’)-Ib 0/0 100.0 99.8 AF313472:15593-16397 APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. aminoglycoside
contig00270 1 826 APH(6)-Id 0/0 98.7 99.8 AF024602:3155-3992 APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum aminoglycoside
contig01596 273 994 baeR 0/0 99.9 98.2 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00349 1117 2489 cpxA 0/0 99.9 97.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig01145 649 1281 CRP 0/0 100.0 99.0 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig00169 2410 2883 dfrA1 0/0 100.0 100.0 KJ541681.1:19526-20000 dfrA1 is an integron-encoded dihydrofolate reductase diaminopyrimidine
contig00533 672 1727 emrK 0/0 100.0 97.0 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig02108 117 647 emrR 0/0 100.0 99.4 U00096.3:2810769-2811300 EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. fluoroquinolone
contig00002 4973 6130 Escherichia_coli_ampH 0/0 100.0 96.7 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig01113 126 740 evgA 0/0 100.0 99.2 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig00101 1032 1760 gadW 0/0 100.0 95.8 CP015085.1:2552440-2551711 GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. fluoroquinolone, macrolide, penam
contig00658 1457 1849 H-NS 0/0 94.9 99.5 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00793 739 1122 marA 0/0 100.0 99.7 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00439 180 1427 mdtA 0/0 100.0 97.4 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00266 530 1687 mdtE 0/0 100.0 98.5 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00596 1 1201 mdtG 0/0 97.9 97.8 CP000800.1:1192954-1191727 The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. fosfomycin
contig00505 597 1805 mdtH 0/0 100.0 98.2 U00096:1125326-1124117 Multidrug resistance protein MdtH fluoroquinolone
contig00485 734 1966 mdtM 0/0 100.0 95.0 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00381 1 2008 mdtO 0/0 97.9 96.7 AP009048.1:4306557-4304505 Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride acridine_dye, nucleoside
contig00033 277 753 mphB 0/0 100.0 97.9 AE005174.2:3397370-3397847 The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. macrolide
contig00169 182 1021 sul1 0/0 100.0 100.0 JF969163:1053-1893 Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. sulfonamide
contig00270 1690 2505 sul2 0/0 100.0 99.6 AY055428.1:21084-20268 Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. sulfonamide
contig00324 469 1956 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00169 1526 2327 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00270 826 1629 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00270 1 826 (AGly)strB 0/0 98.7 99.9 FJ474091:264-1100 (AGly)strB NA
contig00002 4973 6130 (Bla)ampH_Ecoli 0/0 100.0 96.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00169 182 1021 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00270 1690 2505 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00169 2410 2883 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00169 1526 2327 (AGly)aadA1-pm 0/0 96.5 99.9 JQ690540:7968-8798 (AGly)aadA1-pm NA
contig00270 826 1629 (AGly)strA 0/0 100.0 99.9 AB366441:22458-23261 (AGly)strA NA
contig00270 1 826 (AGly)strB 0/0 98.7 99.9 FJ474091:264-1100 (AGly)strB NA
contig00002 4973 6130 (Bla)ampH_Ecoli 0/0 100.0 96.7 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00169 182 1021 (Sul)sul1 0/0 100.0 100.0 AF071413:6700-7539 (Sul)sul1 NA
contig00270 1690 2505 (Sul)sul2 0/0 100.0 99.6 EU360945:1617-2432 (Sul)sul2 NA
contig00169 2410 2883 (Tmt)dfrA1 0/0 100.0 99.8 JQ794607:474 (Tmt)dfrA1 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00004 5503 8652 ACRB 0/0 100.0 99.0 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00002 4973 6130 AMPH 0/0 100.0 96.7 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00169 1526 2327 ANT3-DPRIME 0/0 96.5 99.9 MEG_915 Drugs:Aminoglycosides:Aminoglycoside_O-nucleotidyltransferases:ANT3-DPRIME NA
contig00270 826 1653 APH3-DPRIME 0/0 100.0 100.0 MEG_1019 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH3-DPRIME NA
contig00270 1 826 APH6 0/0 98.7 100.0 MEG_1084 Drugs:Aminoglycosides:Aminoglycoside_O-phosphotransferases:APH6 NA
contig01596 273 994 BAER 0/0 99.9 98.2 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00349 422 1120 CPXAR 0/0 100.0 99.6 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00349 1117 2489 CPXAR 0/0 99.9 98.1 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig01145 649 1281 CRP 0/0 100.0 99.0 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00169 2410 2883 DFRA 0/0 100.0 99.8 MEG_2528 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00533 672 1835 EMRK 0/0 100.0 97.2 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig02108 117 647 EMRR 0/0 100.0 99.4 MEG_2734 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_regulator:EMRR NA
contig00101 1032 1760 GADW 0/0 100.0 97.4 MEG_3081 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:GADW NA
contig00658 1457 1849 HNS 0/0 94.9 99.5 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00793 733 1122 MARA 0/0 100.0 99.7 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00793 285 719 MARR 0/0 100.0 98.4 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00439 180 1427 MDTA 0/0 100.0 97.4 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00266 530 1687 MDTE 0/0 100.0 98.5 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig00596 1 1201 MDTG 0/0 97.9 98.0 MEG_3753 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTG NA
contig00505 597 1805 MDTH 0/0 100.0 98.2 MEG_3755 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTH NA
contig01603 1 306 MDTI 0/0 92.7 99.7 MEG_3756 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTI NA
contig01603 293 658 MDTJ 0/0 100.0 98.4 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00485 734 1966 MDTM 0/0 100.0 95.0 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00381 1 2008 MDTO 0/0 97.9 96.7 MEG_3764 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTO NA
contig00033 277 753 MPHB 0/0 100.0 97.9 MEG_4033 Drugs:MLS:Macrolide_phosphotransferases:MPHB NA
contig00450 828 1697 ROBA 0/0 100.0 99.3 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig01014 67 389 SOXS 0/0 99.7 98.1 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00169 55 1022 SULI 0/0 100.0 100.0 MEG_6615 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULI NA
contig00270 1690 2505 SULII 0/0 100.0 100.0 MEG_6618 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULII NA
Hosp-KAT_039
Resfinder
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00088 3942 4802 blaTEM-1B_1 0/0 100.0 100.0 AY458016 blaTEM-1B Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin
contig00839 236 1495 cmlA1_1 0/0 100.0 99.8 M64556 cmlA1 Chloramphenicol
contig01298 683 1180 dfrA12_8 0/0 100.0 100.0 AM040708 dfrA12 Trimethoprim
contig00016 1123 1914 sul3_2 0/0 100.0 99.9 AJ459418 sul3 Sulfamethoxazole
contig00228 1476 2722 tet(A)_6 0/0 97.8 99.9 AF534183 tet(A) Doxycycline, Tetracycline
CARD
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00309 145 3063 acrB 0/0 92.7 99.1 U00096.3:484403-481253 Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00198 30 851 bacA 0/0 100.0 98.9 U00096.3:3204131-3203309 The bacA gene product (BacA) recycles undecaprenyl pyrophosphate during cell wall biosynthesis which confers resistance to bacitracin. peptide
contig00617 193 915 baeR 0/0 100.0 99.3 AP009048.1:2166412-2167135 BaeR is a response regulator that promotes the expression of MdtABC and AcrD efflux complexes. aminocoumarin, aminoglycoside
contig00839 236 1495 cmlA1 0/0 100.0 99.8 M64556.1:600-1860 cmlA1 is a plasmid or transposon-encoded chloramphenicol exporter that is found in Pseudomonas aeruginosa and Klebsiella pneumoniae phenicol
contig00086 3577 4950 cpxA 0/0 100.0 98.8 BA000007.3:4905062-4903688 CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. aminocoumarin, aminoglycoside
contig00389 995 1627 CRP 0/0 100.0 99.2 AP009048.1:4154296-4153663 CRP is a global regulator that represses MdtEF multidrug efflux pump expression. fluoroquinolone, macrolide, penam
contig01298 683 1180 dfrA12 0/0 100.0 100.0 GU585907.1:22103-21605 dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae diaminopyrimidine
contig00331 122 1294 emrA 0/0 100.0 98.2 AP009048:2810082-2811255 EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. fluoroquinolone
contig00331 1311 2849 emrB 0/0 100.0 98.8 U00096:2812615-2814154 emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. fluoroquinolone
contig00147 704 1759 emrK 0/0 100.0 99.7 D78168:536-1592 emrK is a membrane fusion protein that is a homolog of EmrA. Together with the inner membrane transporter EmrY and the outer membrane channel TolC it mediates multidrug efflux. tetracycline
contig00006 2390 4033 eptA 0/0 100.0 99.4 AP009048:4340268-4338624 PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. peptide
contig00640 208 1401 Escherichia_coli_acrA 0/0 100.0 99.8 U00096.3:485619-484425 AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan
contig00907 591 1655 Escherichia_coli_ampC 0/0 93.9 97.8 U00096.3:4378944-4377810 A class C ampC beta-lactamase (cephalosporinase) enzyme described in Escherichia coli shown clinically to confer resistance to penicillin-like and cephalosporin-class antibiotics. cephalosporin, penam
contig00618 145 1449 Escherichia_coli_ampC1_beta-lactamase 0/0 100.0 98.2 FN649414.1:2765050-2766355 An ampC-like beta-lactamase identified from Escherichia coli. cephalosporin, penam
contig00373 1283 2440 Escherichia_coli_ampH 0/0 100.0 98.8 AP012030.1:396711-395553 AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. cephalosporin, penam
contig00109 1761 2093 Escherichia_coli_emrE 0/0 100.0 92.2 Z11877.1:485-818 Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation macrolide
contig00147 2283 2897 evgA 0/0 100.0 99.0 BA000007.3:3212025-3212640 EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. fluoroquinolone, macrolide, penam, tetracycline
contig01782 86 499 H-NS 0/0 100.0 99.0 BA000007.3:1738104-1737690 H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline
contig00452 1532 1915 marA 0/0 100.0 99.5 AP009048.1:1621287-1621671 In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan
contig00764 117 1364 mdtA 0/0 100.0 98.2 U00096:2154015-2155263 MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. aminocoumarin
contig00346 571 1728 mdtE 0/0 100.0 99.7 AP009048.1:3981183-3980025 MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. fluoroquinolone, macrolide, penam
contig00571 296 1528 mdtM 0/0 100.0 95.5 U00096.3:4568519-4567286 Multidrug resistance protein MdtM acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol
contig00189 70 1818 msbA 0/0 100.0 99.0 U00096.3:966620-968369 MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. nitroimidazole
contig02346 23 355 qacH 0/0 100.0 91.6 DQ149925.1:188-521 qacH is a subunit of the qac multidrug efflux pump in Vibrio cholerae fluoroquinolone
contig00016 1123 1914 sul3 0/0 100.0 99.9 FJ196385:9323-8531 Sul3 is a sulfonamide resistant dihydropteroate synthase similar to Sul1 and Sul2. Its resistance gene was found encoded in E. coli plasmid DNA of sulfonamide resistant isolates. sulfonamide
contig00088 3942 4802 TEM-1 0/0 100.0 99.9 AL513383:161910-162771 TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. cephalosporin, monobactam, penam, penem
contig00228 1476 2722 tet(A) 0/0 97.8 99.9 AF534183.1:2970-4245 TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. tetracycline
contig00005 3313 4800 tolC 0/0 100.0 98.5 FJ768952:0-1488 TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan
ARG-ANNOT
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00618 145 1449 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00907 591 1655 (Bla)AmpC2_Ecoli 0/0 93.9 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00373 1283 2440 (Bla)ampH_Ecoli 0/0 100.0 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00088 3942 4802 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00069 1969 3870 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00839 236 1495 (Phe)cmlA1 0/0 100.0 99.8 M64556:601-1860 (Phe)cmlA1 NA
contig00016 1123 1914 (Sul)sul3 0/0 100.0 99.9 HQ875016:7396-8187 (Sul)sul3 NA
contig00228 1448 2722 (Tet)tetA 0/0 100.0 99.9 JX424423:94438-95712 (Tet)tetA NA
contig00228 2753 3403 (Tet)tetR 0/0 100.0 99.8 HF545434:53576-54226 (Tet)tetR NA
contig01298 683 1180 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
NCBI
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00618 145 1449 (Bla)AmpC1_Ecoli 0/0 100.0 98.2 FN649414:2765051-2766355 (Bla)AmpC1_Ecoli NA
contig00907 591 1655 (Bla)AmpC2_Ecoli 0/0 93.9 97.8 CP002970:332756-333889 (Bla)AmpC2_Ecoli NA
contig00373 1283 2440 (Bla)ampH_Ecoli 0/0 100.0 98.8 AP012030:395554-396711 (Bla)ampH_Ecoli NA
contig00088 3942 4802 (Bla)blaTEM-105 0/0 100.0 99.9 AF516720:215-1075 (Bla)blaTEM-105 NA
contig00069 1969 3870 (Bla)Penicillin_Binding_Protein_Ecoli 0/0 100.0 99.0 CP002291:664439-666340 (Bla)Penicillin_Binding_Protein_Ecoli NA
contig00839 236 1495 (Phe)cmlA1 0/0 100.0 99.8 M64556:601-1860 (Phe)cmlA1 NA
contig00016 1123 1914 (Sul)sul3 0/0 100.0 99.9 HQ875016:7396-8187 (Sul)sul3 NA
contig00228 1448 2722 (Tet)tetA 0/0 100.0 99.9 JX424423:94438-95712 (Tet)tetA NA
contig00228 2753 3403 (Tet)tetR 0/0 100.0 99.8 HF545434:53576-54226 (Tet)tetR NA
contig01298 683 1180 (Tmt)dfrA12 0/0 100.0 100.0 Z21672:310-807 (Tmt)dfrA12 NA
MEGARES
Contig Start End Gene Gaps Coverage Identity Accession Product Resistance
contig00640 208 1401 ACRA 0/0 100.0 99.8 MEG_399 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRA NA
contig00309 145 3063 ACRB 0/0 92.7 99.1 MEG_401 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:ACRB NA
contig00373 1283 2440 AMPH 0/0 100.0 98.8 MEG_729 Drugs:betalactams:Penicillin_binding_protein:AMPH NA
contig00789 1 1834 ASMA 0/0 98.9 98.4 MEG_1180 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_regulator:ASMA NA
contig00198 30 851 BACA 0/0 100.0 98.9 MEG_1189 Drugs:Bacitracin:Undecaprenyl_pyrophosphate_phosphatase:BACA NA
contig00617 193 915 BAER 0/0 100.0 99.3 MEG_1192 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_regulator:BAER NA
contig00540 1 1116 BCR 0/0 98.4 96.5 MEG_1209 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:BCR NA
contig00907 591 1655 BLAEC 0/0 93.9 100.0 MEG_1279 Drugs:betalactams:Class_C_betalactamases:BLAEC NA
contig00839 35 1495 CMLA 1/1 100.0 99.7 MEG_1768 Drugs:Phenicol:Phenicol_resistance_MFS_efflux_pumps:CMLA NA
contig00086 2882 3580 CPXAR 0/0 100.0 99.6 MEG_2118 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00086 3577 4950 CPXAR 0/0 100.0 99.4 MEG_2121 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CPXAR NA
contig00389 995 1627 CRP 0/0 100.0 99.2 MEG_2132 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:CRP NA
contig00796 1 872 CTX 0/0 98.1 95.3 MEG_2430 Drugs:betalactams:Class_A_betalactamases:CTX NA
contig01298 683 1180 DFRA 0/0 100.0 100.0 MEG_2551 Drugs:Trimethoprim:Dihydrofolate_reductase:DFRA NA
contig00331 122 1294 EMRA 0/0 100.0 98.2 MEG_2722 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRA NA
contig00331 1311 2849 EMRB 0/0 100.0 98.8 MEG_2725 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRB NA
contig00147 704 1867 EMRK 0/0 100.0 99.7 MEG_2732 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:EMRK NA
contig00006 2390 4033 EPTA 0/0 100.0 99.4 MEG_2739 Drugs:Cationic_antimicrobial_peptides:Lipid_A_modification:EPTA NA
contig01782 86 499 HNS 0/0 100.0 99.0 MEG_3271 Drugs:Multi-drug_resistance:Multi-drug_RND_efflux_pumps:HNS NA
contig00452 1526 1915 MARA 0/0 100.0 99.5 MEG_3662 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARA NA
contig00452 1078 1512 MARR 0/0 100.0 97.7 MEG_3663 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_regulator:MARR NA
contig00764 117 1364 MDTA 0/0 100.0 98.2 MEG_3746 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:MDTA NA
contig00346 571 1728 MDTE 0/0 100.0 99.7 MEG_3751 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_RND_efflux_pumps:MDTE NA
contig01876 130 495 MDTJ 0/0 100.0 99.7 MEG_3757 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MDTJ NA
contig00571 296 1528 MDTM 0/0 100.0 95.5 MEG_3761 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_MFS_efflux_pumps:MDTM NA
contig00189 70 1818 MSBA 0/0 100.0 99.0 MEG_4061 Drugs:Multi-drug_resistance:Multi-drug_ABC_efflux_pumps:MSBA NA
contig00109 1761 2093 MVRC 0/0 100.0 92.2 MEG_4103 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:MVRC NA
contig00069 1969 3870 PBP2 0/0 100.0 99.0 MEG_5400 Drugs:betalactams:Penicillin_binding_protein:PBP2 NA
contig00618 145 1449 PBP4B 0/0 100.0 98.2 MEG_5409 Drugs:betalactams:Penicillin_binding_protein:PBP4B NA
contig02346 23 355 QACL 0/0 100.0 100.0 MEG_5852 Multi-compound:Drug_and_biocide_resistance:Drug_and_biocide_SMR_efflux_pumps:QACL NA
contig00561 292 1161 ROBA 0/0 100.0 99.4 MEG_6082 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_RND_efflux_pumps:ROBA NA
contig00610 1843 2166 SOXS 0/0 100.0 100.0 MEG_6551 Multi-compound:Drug_and_biocide_and_metal_resistance:Drug_and_biocide_and_metal_resistance_regulator:SOXS NA
contig00016 1123 1914 SULIII 0/0 100.0 99.9 MEG_6639 Drugs:Sulfonamides:Sulfonamide-resistant_dihydropteroate_synthases:SULIII NA
contig00088 3575 4820 TEM 0/0 98.3 99.4 MEG_6875 Drugs:betalactams:Class_A_betalactamases:TEM NA
contig00228 1448 2722 TETA 0/0 100.0 99.9 MEG_7024 Drugs:Tetracyclines:Tetracycline_resistance_MFS_efflux_pumps:TETA NA


Summary figures

Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample

Select the database
Resfinder
CARD
ARG-ANNOT
NCBI
MEGARES


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Plasmid Profiling

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Catt-BWE_048B
## [1] "NO PLASMID FOUND!!"
Catt-BWE_054A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00031 5673 5814 IncI1_1_Alpha 0/0 100 99.3 AP005147 IncI1_1_Alpha_AP005147
Catt-BWE_113B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00150 3342 3729 IncFIA_1 0/0 100 100.0 AP001918 IncFIA_1__AP001918
contig00087 1891 2572 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00028 3737 3878 IncI1_1_Alpha 0/0 100 100.0 AP005147 IncI1_1_Alpha_AP005147
Catt-HIM_031B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00874 452 712 IncFII(pRSB107)_1_pRSB107 0/0 100 100 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
Catt-HIM_045B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00024 593 1274 IncFIB(AP001918)_1 0/0 100 97.7 AP001918 IncFIB(AP001918)_1__AP001918
Catt-HIM_048B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01949 1 485 IncHI1B(CIT)_1_pNDM-CIT 0/0 90.2 92.8 JX182975 IncHI1B(CIT)_1_pNDM-CIT_JX182975
contig00432 1416 2300 p0111_1 0/0 100.0 98.5 AP010962 p0111_1__AP010962
Catt-HIM_068A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig02025 68 328 IncFII_1 0/0 100 97.7 AY458016 IncFII_1__AY458016
Catt-HIM_073A
## [1] "NO PLASMID FOUND!!"
Catt-HIM_082A1
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01904 68 328 IncFII_1 0/0 100 97.7 AY458016 IncFII_1__AY458016
Catt-KAT_009_A1
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00411 2272 2953 IncFIB(AP001918)_1 0/0 100 98.2 AP001918 IncFIB(AP001918)_1__AP001918
Catt-KAT_013A1
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00152 41 428 IncFIA_1 0/0 100 100.0 AP001918 IncFIA_1__AP001918
contig00005 4677 5358 IncFIB(AP001918)_1 0/0 100 98.5 AP001918 IncFIB(AP001918)_1__AP001918
Catt-KAT_036B
## [1] "NO PLASMID FOUND!!"
Home-BWE_054A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00037 5978 6659 IncFIB(AP001918)_1 0/0 100 97.4 AP001918 IncFIB(AP001918)_1__AP001918
contig00027 8857 9117 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
Home-HIM_031A
## [1] "NO PLASMID FOUND!!"
Home-HIM_032A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00049 1589 2270 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
Home-HIM_045A
## [1] "NO PLASMID FOUND!!"
Home-HIM_047B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00229 3240 3986 IncFII(pECLA)_1_pECLA 0/0 100 96.2 CP001919 IncFII(pECLA)_1_pECLA_CP001919
Home-HIM_048A
## [1] "NO PLASMID FOUND!!"
Home-HIM_068B
## [1] "NO PLASMID FOUND!!"
Home-HIM_071A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00001 10913 11594 IncFIB(AP001918)_1 0/0 100 99.6 AP001918 IncFIB(AP001918)_1__AP001918
Home-HIM_072A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00153 1170 1851 IncFIB(AP001918)_1 0/0 100 98.7 AP001918 IncFIB(AP001918)_1__AP001918
contig00086 2974 3234 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
Home-HIM_073B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00009 685 838 Col156_1 0/0 100 98.7 NC_009781 Col156_1__NC_009781
contig00049 2274 2955 IncFIB(AP001918)_1 0/0 100 96.6 AP001918 IncFIB(AP001918)_1__AP001918
contig00197 1122 1380 IncFII(29)_1_pUTI89 0/0 100 100.0 CP003035 IncFII(29)_1_pUTI89_CP003035
Home-HIM_075A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00322 1833 2514 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
Home-HIM_82A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00093 4747 4897 IncB/O/K/Z_1 2/2 99.3 98.0 CU928147 IncB/O/K/Z_1__CU928147
contig00343 779 1460 IncFIB(AP001918)_1 0/0 100.0 97.2 AP001918 IncFIB(AP001918)_1__AP001918
Home-KAT_009A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00175 1709 1818 Col440I_1 0/0 96.5 96.4 CP023920.1 Col440I_1__CP023920.1
contig01726 486 848 IncFIA_1 0/0 93.6 99.2 AP001918 IncFIA_1__AP001918
contig00340 763 1444 IncFIB(AP001918)_1 0/0 100.0 97.5 AP001918 IncFIB(AP001918)_1__AP001918
Home-KAT_013A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00019 3211 3362 Col156_1 0/0 98.7 95.4 NC_009781 Col156_1__NC_009781
Home-KAT_023A
## [1] "NO PLASMID FOUND!!"
Home-KAT_039B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00879 526 945 IncHI1A_1 0/0 100 100 AF250878 IncHI1A_1__AF250878
contig00001 19858 20852 pSL483_1 0/0 100 93 CP001137 pSL483_1__CP001137
Hosp-BWE_048
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00554 288 549 Col(MG828)_1 0/0 100 92.0 NC_008486 Col(MG828)_1__NC_008486
contig00718 484 1165 IncFIB(AP001918)_1 0/0 100 95.3 AP001918 IncFIB(AP001918)_1__AP001918
Hosp-BWE_054
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00111 1273 1414 Col156_1 0/0 92.2 98.6 NC_009781 Col156_1__NC_009781
contig00049 1679 2360 IncFIB(AP001918)_1 0/0 100.0 96.6 AP001918 IncFIB(AP001918)_1__AP001918
contig00016 3322 3580 IncFII(29)_1_pUTI89 0/0 100.0 99.6 CP003035 IncFII(29)_1_pUTI89_CP003035
contig00006 7317 8081 IncY_1 0/0 100.0 99.9 K02380 IncY_1__K02380
Hosp-BWE_076
## [1] "NO PLASMID FOUND!!"
Hosp-BWE_106
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00001 3365 3748 IncFIA_1 0/0 99.0 100.0 AP001918 IncFIA_1__AP001918
contig00027 564 1245 IncFIB(AP001918)_1 0/0 100.0 97.8 AP001918 IncFIB(AP001918)_1__AP001918
contig00011 1600 2096 IncFIC(FII)_1 1/2 99.6 95.6 AP001918 IncFIC(FII)_1__AP001918
Hosp-HIM_031
## [1] "NO PLASMID FOUND!!"
Hosp-HIM_045
## [1] "NO PLASMID FOUND!!"
Hosp-HIM_048
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00003 12699 13380 IncFIB(AP001918)_1 0/0 100 99.3 AP001918 IncFIB(AP001918)_1__AP001918
Hosp-HIM_068
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00024 10697 11461 IncY_1 0/0 100 98.8 K02380 IncY_1__K02380
Hosp-HIM_071A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01233 359 512 Col156_1 0/0 100 98.7 NC_009781 Col156_1__NC_009781
contig00087 2156 2837 IncFIB(AP001918)_1 0/0 100 96.6 AP001918 IncFIB(AP001918)_1__AP001918
contig00001 10360 10618 IncFII(29)_1_pUTI89 0/0 100 100.0 CP003035 IncFII(29)_1_pUTI89_CP003035
Hosp-HIM_82
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00011 4050 4163 Col440I_1 0/0 100.0 94.7 CP023920.1 Col440I_1__CP023920.1
contig00512 1576 1730 IncB/O/K/Z_2 1/1 96.2 96.1 GU256641 IncB/O/K/Z_2__GU256641
Hosp-KAT_009
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00249 1371 1484 Col440I_1 0/0 100 94.7 CP023920.1 Col440I_1__CP023920.1
contig00048 2262 2943 IncFIB(AP001918)_1 0/0 100 96.8 AP001918 IncFIB(AP001918)_1__AP001918
Hosp-KAT_013
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00035 1832 2513 IncFIB(AP001918)_1 0/0 100 98.4 AP001918 IncFIB(AP001918)_1__AP001918
Hosp-KAT_023
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00011 3365 3752 IncFIA_1 0/0 100 99.7 AP001918 IncFIA_1__AP001918
contig00032 1858 2539 IncFIB(AP001918)_1 0/0 100 97.7 AP001918 IncFIB(AP001918)_1__AP001918
contig00020 4419 4679 IncFII(pRSB107)_1_pRSB107 0/0 100 100.0 AJ851089 IncFII(pRSB107)_1_pRSB107_AJ851089
Hosp-KAT_039
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00066 4509 4759 IncR_1 0/0 100 100 DQ449578 IncR_1__DQ449578


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Virulence Factor Determination

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Catt-BWE_048B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00811 567 1424 entB 0/0 100.0 97.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01448 1 915 fepB 0/0 95.6 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00635 750 1940 fes 0/0 99.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00029 5052 5656 fimA 1/1 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00029 3686 4411 fimC 0/0 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00029 983 3619 fimD 0/0 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00029 443 976 fimF 0/0 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01450 70 978 fimH 0/0 99.7 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00029 4448 4987 fimI 0/0 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00321 1535 2365 gspC 0/0 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00572 210 740 gspH 0/0 100.0 95.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00572 737 1108 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00572 1141 1710 gspJ 0/0 100.0 96.5 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00019 167 1027 gspL 0/0 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00019 1143 1565 gspM 0/0 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01138 182 1234 ompA 1/12 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00733 555 1308 yagV/ecpE 0/0 99.7 96.7 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00208 2441 3109 yagY/ecpB 0/0 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00208 1796 2383 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00208 1131 1721 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-BWE_054A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00272 680 1708 chuS 0/0 100.0 97.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00409 326 1318 chuU 0/0 100.0 99.0 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00409 1285 2085 chuV 0/0 100.0 98.1 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00425 468 1805 chuW 0/0 100.0 96.7 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00273 1204 1950 entA 0/0 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00273 347 1204 entB 0/0 100.0 98.5 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00344 1 2014 espL4 0/0 92.1 97.3 NP_290644 (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00066 122 4372 fdeC 0/0 100.0 94.8 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00395 9 1025 fepD 0/0 100.0 95.6 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00395 1022 2014 fepG 0/0 100.0 95.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00789 600 1802 fes 0/0 100.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig01269 490 1095 fimA 0/0 100.0 90.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01910 3 605 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00224 2609 3334 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00224 1 2543 fimD 0/0 96.4 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01895 299 757 fimG 0/0 91.1 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01560 70 981 fimH 0/0 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00487 700 1530 gspC 0/0 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00280 1133 2626 gspE 0/0 100.0 94.3 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00441 457 912 gspG 0/0 100.0 96.7 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00441 949 1479 gspH 0/0 100.0 96.4 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00441 1476 1847 gspI 0/0 100.0 93.5 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00441 1880 2449 gspJ 0/0 100.0 96.0 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00650 850 1272 gspM 0/0 100.0 97.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00949 215 1255 ompA 0/0 100.0 98.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00425 1818 2312 shuX 0/0 100.0 95.8 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00639 1364 2032 yagY/ecpB 0/0 100.0 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00639 719 1306 yagZ/ecpA 0/0 100.0 99.0 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00639 54 644 ykgK/ecpR 0/0 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-BWE_113B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01089 316 1173 entB 0/0 100.0 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00015 5480 7818 faeD 0/0 95.9 91.4 YP_002295985 (faeD) fimbrial usher protein FaeD [K88 pili/F4 fimbriae (AI040)] [Escherichia coli SE11]
contig00485 47 862 fepC 0/0 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00429 326 1528 fes 0/0 100.0 96.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00696 1406 2011 fimA 0/0 100.0 90.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00696 40 765 fimC 0/0 100.0 98.1 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00139 2018 4588 fimD 0/0 97.5 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01967 1 590 fimE 0/0 98.8 98.6 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00139 1478 2011 fimF 0/0 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00139 962 1465 fimG 0/0 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00139 40 951 fimH 0/0 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00696 802 1341 fimI 0/0 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00417 1 1792 gspD 1/15 96.8 96.9 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00149 2965 3420 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00149 2398 2928 gspH 0/0 100.0 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00149 2030 2401 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00149 1428 1997 gspJ 0/0 100.0 97.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00149 454 1431 gspK 0/0 100.0 96.6 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02005 103 525 gspM 0/0 100.0 93.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00945 303 1343 ompA 0/0 100.0 98.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00749 1024 1777 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00045 5576 6244 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00045 4931 5518 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00045 4266 4856 ykgK/ecpR 0/0 100.0 97.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-HIM_031B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00004 1062 1178 astA 0/0 100.0 98.3 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig01377 150 719 espY2 0/0 100.0 94.4 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01066 109 703 fimE 0/0 99.7 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00119 309 812 fimG 0/0 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00119 823 1734 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00435 499 1038 fimI 0/0 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00083 894 1724 gspC 0/0 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00446 381 752 gspI 0/0 100.0 96.0 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00187 525 887 gtrA 0/0 100.0 90.1 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00623 1 775 kpsM 0/0 99.7 94.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig01126 110 697 yagZ/ecpA 0/0 100.0 98.8 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-HIM_045B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01774 170 286 astA 0/0 100 96.6 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig01134 139 996 entB 0/0 100 97.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01018 500 1102 fimB 0/0 100 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 1488 2021 fimF 0/0 100 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 972 1475 fimG 0/0 100 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00043 50 961 fimH 0/0 100 97.8 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00532 638 1177 fimI 0/0 100 97.8 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00002 2300 5296 hlyA 0/0 100 98.4 YP_325608 (hlyA) hemolysin toxin protein [Hemolysin (VF0207)] [Escherichia coli O157:H7 str. EDL933]
contig00002 130 2250 hlyB 0/0 100 99.2 YP_325609 (hlyB) hemolysin transport protein [Hemolysin (VF0207)] [Escherichia coli O157:H7 str. EDL933]
contig00002 5298 5813 hlyC 0/0 100 97.1 YP_325607 (hlyC) hemolysin transport protein [Hemolysin (VF0207)] [Escherichia coli O157:H7 str. EDL933]
contig00038 1657 2697 ompA 0/0 100 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00548 378 1337 stx2A 0/0 100 98.3 NP_286976 (stx2A) shiga-like toxin II A subunit encoded by bacteriophage BP-933W [Stx (VF0206)] [Escherichia coli O157:H7 str. EDL933]
contig00548 97 366 stx2B 0/0 100 96.7 NP_286977 (stx2B) shiga-like toxin II B subunit encoded by bacteriophage BP-933W [Stx (VF0206)] [Escherichia coli O157:H7 str. EDL933]
contig00188 1629 2297 yagY/ecpB 0/0 100 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00188 983 1570 yagZ/ecpA 0/0 100 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00188 318 908 ykgK/ecpR 0/0 100 97.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-HIM_048B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00834 45 1473 aslA 1/1 100.0 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00351 436 1182 entA 0/0 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00616 253 1440 entC 0/0 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00568 1033 1848 fepC 0/0 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00544 692 1708 fepD 0/0 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01481 206 811 fimA 0/0 100.0 90.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01878 1 592 fimB 0/0 98.2 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 4751 5476 fimC 0/0 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 2048 4684 fimD 0/0 100.0 98.3 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 1508 2041 fimF 0/0 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 992 1495 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 70 981 fimH 0/0 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00058 500 1330 gspC 0/0 100.0 95.4 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00058 1570 3420 gspD 1/15 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00058 3420 4913 gspE 0/0 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01861 200 636 gspG 0/0 95.8 94.7 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01714 187 558 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00724 23 883 gspL 0/0 100.0 97.2 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02101 103 490 gspM 0/0 91.7 97.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00787 413 1453 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
Catt-HIM_068A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01075 459 1205 entA 0/0 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01095 1 1143 entC 0/0 96.2 97.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01474 1 928 fepB 0/0 97.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00434 1213 2028 fepC 0/0 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01489 386 976 fimA 1/1 97.5 90.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00566 406 909 fimG 0/0 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00566 920 1831 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00963 326 1156 gspC 0/0 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00088 330 1823 gspE 0/0 100.0 97.1 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00088 1823 3022 gspF 0/0 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00088 3063 3518 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01337 118 687 gspJ 0/0 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02122 93 515 gspM 0/0 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01152 154 1206 ompA 1/12 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00142 779 1447 yagY/ecpB 0/0 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00142 134 721 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-HIM_073A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01620 142 823 entA 0/0 91.3 95.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01918 74 679 fimA 0/0 100.0 90.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01743 194 780 fimB 0/0 97.3 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00462 786 1511 fimC 0/0 100.0 98.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00488 943 1476 fimF 0/0 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00488 427 930 fimG 0/0 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00139 1787 2356 gspJ 0/0 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00139 813 1790 gspK 0/0 100.0 97.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00063 1366 2034 yagY/ecpB 0/0 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00063 721 1308 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00063 56 646 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-HIM_082A1
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00668 795 1541 entA 0/0 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00668 1 795 entB 0/0 92.7 97.6 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00539 1025 2275 entS 0/0 100.0 95.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00539 65 1021 fepB 0/0 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00494 725 1927 fes 0/0 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig02179 1 550 fimA 1/1 90.8 90.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01682 242 844 fimB 0/0 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01023 223 948 fimC 0/0 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00415 319 852 fimF 0/0 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01403 50 961 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01023 985 1524 fimI 0/0 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00212 775 1605 gspC 0/0 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00212 1845 3648 gspD 1/15 97.4 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00173 1 1448 gspE 0/0 96.9 97.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00173 1448 2647 gspF 0/0 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00173 2688 3143 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00173 3180 3710 gspH 0/0 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01267 301 1054 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00396 1 2330 yagX/ecpC 0/0 92.2 98.5 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01851 51 641 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-KAT_009_A1
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00761 247 1675 aslA 1/1 100.0 92.7 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00297 3931 4677 entA 0/0 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00297 3074 3931 entB 0/0 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00297 253 1440 entC 0/0 100.0 97.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00297 1450 3060 entE 0/0 100.0 95.4 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00720 39 1289 entS 0/0 100.0 95.4 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00634 169 2409 fepA 0/0 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00437 1571 2386 fepC 0/0 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00437 2383 3375 fepG 0/0 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00513 23 1225 fes 0/0 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig01083 234 836 fimB 0/0 100.0 98.2 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00188 4090 4815 fimC 0/0 100.0 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00188 1387 4023 fimD 0/0 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01187 1 580 fimE 0/0 97.2 99.5 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00188 847 1380 fimF 0/0 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00188 331 834 fimG 0/0 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00188 4852 5391 fimI 0/0 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00306 653 2503 gspD 1/15 100.0 96.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00306 2503 3996 gspE 0/0 100.0 95.6 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00616 1876 2331 gspG 0/0 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00616 1309 1839 gspH 0/0 100.0 96.2 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00616 941 1312 gspI 0/0 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00616 339 908 gspJ 0/0 100.0 94.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00752 193 1053 gspL 0/0 100.0 95.2 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00799 725 1501 kpsM 0/0 100.0 95.0 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00530 1006 2046 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00280 837 1590 yagV/ecpE 0/0 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00255 2055 4580 yagX/ecpC 0/0 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00255 1361 2029 yagY/ecpB 0/0 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00255 716 1303 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00255 51 641 ykgK/ecpR 0/0 100.0 97.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-KAT_013A1
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00228 125 2365 fepA 0/0 100.0 97.6 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00886 27 530 fimG 0/0 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01120 156 986 gspC 0/0 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00175 38 1888 gspD 1/15 100.0 97.6 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00117 665 1864 gspF 0/0 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00117 1905 2360 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00117 2397 2927 gspH 0/0 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00200 1722 2291 gspJ 0/0 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00200 748 1725 gspK 0/0 100.0 97.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00190 1577 2330 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00190 10 1653 yagW/ecpD 0/0 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00726 688 1356 yagY/ecpB 0/0 100.0 98.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00726 43 630 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Catt-KAT_036B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00139 286 819 fimF 0/0 100 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00401 21 392 gspI 0/0 100 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
Home-BWE_054A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00577 1 2446 aggC 0/0 96.7 99.7 AAA57452 (aggC) usher protein [AAFs (VF0214)] [Escherichia coli 17-2]
contig00825 1118 1234 astA 0/0 100.0 98.3 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00141 1640 2632 chuU 0/0 100.0 98.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00141 873 1673 chuV 0/0 100.0 98.9 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00141 3811 5148 chuW 0/0 100.0 96.7 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00141 2681 3304 chuY 0/0 100.0 97.0 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00579 1393 2250 entB 0/0 100.0 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00664 516 2414 espL1 0/0 100.0 96.7 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00424 98 667 espY2 0/0 100.0 94.4 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01061 654 1431 fepC 0/0 95.3 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00718 837 1853 fepD 0/0 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00666 479 1681 fes 0/0 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00669 1727 2332 fimA 0/0 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01052 790 1391 fimB 1/1 99.8 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00669 361 1086 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01311 171 765 fimE 0/0 99.7 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01014 32 535 fimG 0/0 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01014 546 1457 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00669 1123 1662 fimI 0/0 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00107 1511 2341 gspC 0/0 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00107 2581 4431 gspD 1/15 100.0 95.4 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00107 4431 5924 gspE 0/0 100.0 95.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00399 115 570 gspG 0/0 100.0 97.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00399 607 1137 gspH 0/0 100.0 95.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00399 1134 1505 gspI 0/0 100.0 96.0 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00399 1538 2107 gspJ 0/0 100.0 95.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00399 2104 3081 gspK 0/0 100.0 97.0 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01345 444 853 gspM 0/0 96.9 97.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01015 511 873 gtrA 0/0 100.0 90.1 NP_706257 (gtrA) bactoprenol-linked glucose translocase/flippase [LPS (VF0124)] [Shigella flexneri 2a str. 301]
contig00541 1 1586 kpsD 0/0 94.6 96.9 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00917 626 1402 kpsM 0/0 100.0 94.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00071 1015 2055 ompA 0/0 100.0 98.9 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00327 1160 2188 shuS 0/0 100.0 96.5 YP_405020 (shuS) heme/hemoglobin transport protein ShuS [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00141 3304 3798 shuX 0/0 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00215 856 1609 yagV/ecpE 0/0 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00468 1031 1699 yagY/ecpB 0/0 100.0 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00468 386 973 yagZ/ecpA 0/0 100.0 98.8 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_031A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00347 1563 2813 entS 0/0 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00083 2562 4460 espL1 0/0 100.0 94.9 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00153 278 4503 fdeC 1/3 99.4 91.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00347 603 1559 fepB 0/0 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00745 794 1609 fepC 0/0 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01602 208 810 fimB 0/0 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00552 343 1068 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00175 1488 2021 fimF 0/0 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00175 972 1475 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00175 50 961 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00552 1105 1644 fimI 0/0 100.0 97.6 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00433 1535 2365 gspC 0/0 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00567 200 655 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00567 692 1222 gspH 0/0 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00567 1219 1590 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00567 1623 2192 gspJ 0/0 100.0 97.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01929 103 525 gspM 0/0 100.0 93.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00382 56 1096 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00108 1461 2214 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00108 1 1537 yagW/ecpD 0/0 93.5 98.8 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00080 3997 4665 yagY/ecpB 0/0 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00080 3352 3939 yagZ/ecpA 0/0 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00080 2687 3277 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_032A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00831 996 1598 fimB 0/0 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00203 1 2453 fimD 0/0 93.0 98.4 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01733 259 792 fimF 0/0 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01265 222 1133 fimH 0/0 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00888 68 607 fimI 0/0 100.0 98.7 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00695 92 922 gspC 0/0 100.0 96.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00115 1161 2360 gspF 0/0 100.0 96.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00115 2401 2856 gspG 0/0 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00115 2893 3423 gspH 0/0 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00115 3420 3788 gspI 0/0 99.2 95.1 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02063 1 556 gspJ 0/0 97.5 96.8 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01302 640 1062 gspM 0/0 100.0 94.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01247 350 1103 yagV/ecpE 0/0 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00736 24 692 yagY/ecpB 0/0 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01011 830 1398 yagZ/ecpA 0/0 96.8 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01011 165 755 ykgK/ecpR 0/0 100.0 97.1 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_045A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00840 1047 1750 entA 0/0 94.2 96.3 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00507 588 2198 entE 0/0 100.0 95.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00010 1 1214 espX5 1/12 93.0 94.7 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00647 133 2373 fepA 0/0 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00916 496 1452 fepB 0/0 100.0 97.3 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00401 759 1775 fepD 0/0 100.0 95.7 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00401 1772 2764 fepG 0/0 100.0 94.6 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00715 869 2071 fes 0/0 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig01265 221 823 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00444 786 1511 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00806 370 873 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00806 884 1795 fimH 0/0 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00444 1548 2087 fimI 0/0 100.0 97.8 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00021 9031 9861 gspC 0/0 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 6941 8791 gspD 1/15 100.0 97.3 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 5448 6941 gspE 0/0 100.0 96.2 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 4249 5448 gspF 0/0 100.0 96.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 3753 4208 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 3186 3716 gspH 0/0 100.0 95.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 2818 3189 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 2216 2785 gspJ 0/0 100.0 96.5 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 1242 2219 gspK 0/0 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00021 67 927 gspL 0/0 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01499 103 518 gspM 0/0 98.3 94.0 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00562 15 1067 ompA 1/12 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00206 950 1703 yagV/ecpE 0/0 99.7 96.7 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 7636 10161 yagX/ecpC 0/0 100.0 98.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 6942 7610 yagY/ecpB 0/0 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00029 6297 6884 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00703 599 2176 ybtE 0/0 100.0 99.8 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00238 1606 2910 ybtS 0/0 100.0 97.5 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00156 4921 6021 ybtU 0/0 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00238 2938 4218 ybtX 0/0 100.0 97.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00029 5632 6222 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_047B
## [1] "NO VIRULENCE FACTORS DETECTED!!!"
Home-HIM_048A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00512 53 1481 aslA 1/1 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00331 2261 4207 chuA 0/0 100.0 99.7 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00331 1184 2212 chuS 0/0 100.0 99.3 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00414 107 1099 chuT 0/0 100.0 99.7 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00540 1614 2414 chuV 0/0 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00414 1119 2456 chuW 0/0 100.0 99.4 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00414 2469 2963 chuX 0/0 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00414 2963 3586 chuY 0/0 100.0 99.5 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00083 6631 7488 entB 0/0 100.0 99.3 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00083 3810 4997 entC 0/0 100.0 99.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00083 5007 6617 entE 0/0 100.0 98.8 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00247 1443 5296 entF 0/0 99.3 98.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00083 1423 2673 entS 0/0 100.0 97.9 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00062 2793 7043 fdeC 0/0 100.0 99.2 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00655 125 2365 fepA 0/0 100.0 99.5 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00083 2677 3633 fepB 0/0 100.0 99.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00603 1232 2047 fepC 0/0 100.0 99.0 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00083 308 1324 fepD 0/0 100.0 98.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00247 23 1225 fes 0/0 100.0 99.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00377 3142 3747 fimA 0/0 100.0 91.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01154 183 775 fimB 0/0 98.3 99.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00377 1776 2501 fimC 0/0 100.0 99.2 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00554 1514 2047 fimF 0/0 100.0 98.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00554 998 1501 fimG 0/0 100.0 99.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00554 76 987 fimH 0/0 100.0 99.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00377 2538 3077 fimI 0/0 100.0 99.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00622 519 2369 gspD 1/15 100.0 94.7 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00451 2025 2480 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00451 1458 1988 gspH 0/0 100.0 94.9 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00451 1090 1461 gspI 0/0 100.0 91.4 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00451 488 1057 gspJ 0/0 100.0 94.6 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00741 542 1402 gspL 0/0 100.0 95.5 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00741 5 426 gspM 0/0 99.8 93.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00317 1668 3038 ibeA 2/2 99.9 98.5 AAF98391 (ibeA) invasion protein IbeA [Ibes (VF0237)] [Escherichia coli O18:K1:H7 str. RS218]
contig00082 2448 4124 kpsD 0/0 100.0 99.2 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00681 606 1382 kpsM 0/0 100.0 95.2 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00941 15 1055 ompA 0/0 100.0 99.6 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00152 2749 3502 yagV/ecpE 0/0 99.7 98.4 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00152 1182 2825 yagW/ecpD 0/0 100.0 99.2 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00452 1532 2200 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00452 888 1475 yagZ/ecpA 0/0 100.0 98.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00515 1215 2018 ybtT 0/0 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00515 2015 3115 ybtU 0/0 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00607 380 1660 ybtX 0/0 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00452 224 814 ykgK/ecpR 0/0 100.0 99.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_068B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00758 1 1380 aslA 1/1 96.6 92.9 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00931 439 1395 fepB 0/0 100.0 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00311 898 2100 fes 0/0 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00884 690 1295 fimA 0/0 100.0 92.4 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00906 692 1294 fimB 0/0 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00426 1508 2041 fimF 0/0 100.0 97.0 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00426 992 1495 fimG 0/0 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00426 70 981 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00884 86 625 fimI 0/0 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00076 177 2027 gspD 1/15 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00076 2027 3520 gspE 0/0 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00775 154 609 gspG 0/0 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00775 646 1176 gspH 0/0 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00775 1173 1544 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00928 1 823 gspL 0/0 95.6 97.0 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00928 939 1361 gspM 0/0 100.0 97.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00304 1164 2204 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig01129 4 757 yagV/ecpE 0/0 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00100 734 1402 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00100 89 676 yagZ/ecpA 0/0 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_071A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00795 41 1469 aslA 1/1 100.0 94.0 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00355 891 2228 chuW 0/0 100.0 96.3 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig01641 26 775 espY1 1/3 99.6 95.6 NP_285753 (espY1) Type III secretion system effector EspY1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00728 684 1499 fepC 0/0 100.0 96.9 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00558 991 2183 fes 0/0 99.2 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00019 6099 6704 fimA 0/0 100.0 96.9 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 4733 5458 fimC 0/0 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 2030 4666 fimD 0/0 100.0 98.6 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 1490 2023 fimF 0/0 100.0 96.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 974 1477 fimG 0/0 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 52 963 fimH 0/0 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00019 5495 6034 fimI 0/0 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00591 278 2112 gspD 1/15 99.1 97.5 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00854 189 1637 gspE 0/0 97.0 97.8 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 3396 3851 gspG 0/0 100.0 96.7 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 2829 3359 gspH 0/0 100.0 97.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 2461 2832 gspI 0/0 100.0 94.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 1859 2428 gspJ 0/0 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00138 885 1862 gspK 0/0 100.0 96.3 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01914 325 726 gspM 0/0 95.0 95.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00491 1639 2334 shuV 0/0 90.3 98.8 YP_405013 (shuV) ATP-binding component of hemin transport system [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00355 2241 2735 shuX 0/0 100.0 98.2 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig01176 337 1092 yagV/ecpE 0/0 100.0 98.3 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01169 326 994 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01496 80 670 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_072A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01102 917 1313 agg3B 0/0 90.0 99.8 AAM88297 (agg3B) invasin protein [AAFs (VF0214)] [Escherichia coli 55989]
contig01774 551 667 astA 0/0 100.0 100.0 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00143 1183 1929 entA 0/0 100.0 95.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00143 326 1183 entB 0/0 100.0 97.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00494 243 1430 entC 0/0 100.0 97.6 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00773 241 1491 entS 0/0 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00408 845 1660 fepC 0/0 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00951 185 1015 gspC 0/0 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 4919 6412 gspE 0/0 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 3720 4919 gspF 0/0 100.0 96.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 3224 3679 gspG 0/0 100.0 95.6 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 2657 3187 gspH 0/0 100.0 95.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 2289 2660 gspI 0/0 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 1687 2256 gspJ 0/0 100.0 96.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00008 713 1690 gspK 0/0 100.0 96.4 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02408 93 480 gspM 0/0 91.7 93.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00409 826 1773 iucB 0/0 100.0 99.8 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig01249 221 974 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00071 894 3419 yagX/ecpC 0/0 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00071 200 868 yagY/ecpB 0/0 100.0 98.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01551 34 937 ybtA 0/0 94.2 99.7 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00307 530 2332 ybtQ 0/0 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00248 1616 2920 ybtS 0/0 100.0 99.6 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00842 524 1602 ybtU 0/0 98.0 99.7 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
Home-HIM_073B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00563 180 1607 aslA 2/2 99.9 96.3 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00102 1283 2311 chuS 0/0 100.0 97.7 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00277 1672 2466 chuV 0/0 99.2 99.5 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00720 731 1225 chuX 0/0 100.0 97.4 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00076 1833 3020 entC 0/0 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00076 700 1656 fepB 0/0 100.0 98.1 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00431 759 1574 fepC 0/0 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00861 115 570 gspG 0/0 100.0 94.5 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00861 607 1137 gspH 0/0 100.0 94.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00861 1134 1479 gspI 0/0 93.0 91.3 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00910 333 1310 gspK 0/0 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00571 1 1713 iucA 0/0 96.1 99.9 NP_709454 (iucA) aerobactin synthesis protein IucA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00267 500 1837 iucD 0/0 100.0 99.8 NP_709457 (iucD) aerobactin synthesis protein IucC lysine 6-monooxygenase [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00087 1 1560 kpsD 0/0 93.0 99.0 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00527 683 1459 kpsM 0/0 100.0 99.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00527 27 686 kpsT 0/0 100.0 100.0 AAA24047 (kpsT) KpsT [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00868 3 1055 ompA 1/12 100.0 95.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00017 338 2860 papC 0/0 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00017 3060 3665 papD 0/0 100.0 99.7 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00017 4838 5377 papE 2/6 99.4 93.5 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00017 5422 5955 papF 1/3 100.0 94.0 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00856 508 1486 papG 0/0 96.8 99.2 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00017 3702 4283 papJ 0/0 100.0 97.9 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00017 4290 4829 papK 0/0 100.0 99.3 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00009 5505 6643 senB 0/0 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig01458 221 974 yagV/ecpE 0/0 99.7 97.6 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00173 382 1050 yagY/ecpB 0/0 100.0 98.8 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00773 659 1564 ybtA 0/0 94.4 99.7 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig01894 3 553 ykgK/ecpR 0/0 93.2 99.8 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_075A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00085 10279 11025 entA 0/0 100.0 95.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 9422 10279 entB 0/0 100.0 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 6601 7788 entC 0/0 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 7798 9408 entE 0/0 100.0 95.9 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00205 3936 7789 entF 0/0 99.3 95.4 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 4214 5464 entS 0/0 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00038 1157 3025 espL1 2/30 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00016 9064 13289 fdeC 1/3 99.4 92.4 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00205 33 2273 fepA 0/0 100.0 96.9 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 5468 6424 fepB 0/0 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 1298 2113 fepC 0/0 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 3099 4115 fepD 0/0 100.0 95.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 2110 3102 fepG 0/0 100.0 94.6 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00205 2516 3718 fes 0/0 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00697 1 603 fimA 1/1 99.5 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00699 220 822 fimB 0/0 100.0 98.0 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00284 4731 5456 fimC 0/0 100.0 97.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00284 2028 4664 fimD 0/0 100.0 98.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00284 1488 2021 fimF 0/0 100.0 96.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00284 972 1475 fimG 0/0 100.0 97.6 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00284 50 961 fimH 0/0 100.0 97.7 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00104 9605 10435 gspC 0/0 100.0 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 7515 9365 gspD 1/15 100.0 97.2 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 6022 7515 gspE 0/0 100.0 96.5 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 4823 6022 gspF 0/0 100.0 96.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 4327 4782 gspG 0/0 100.0 95.4 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 3760 4290 gspH 0/0 100.0 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 3392 3763 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 2790 3359 gspJ 0/0 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 1816 2793 gspK 0/0 100.0 97.5 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 641 1501 gspL 0/0 100.0 97.6 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00104 103 525 gspM 0/0 100.0 93.8 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00041 5511 6551 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00016 22395 23148 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 20828 22471 yagW/ecpD 0/0 100.0 98.6 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 18313 20838 yagX/ecpC 0/0 100.0 98.7 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 17619 18287 yagY/ecpB 0/0 100.0 98.7 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 16974 17561 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00016 16309 16899 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-HIM_82A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00144 3019 3765 entA 0/0 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00144 2162 3019 entB 0/0 100.0 98.0 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00144 538 2148 entE 0/0 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00267 133 702 espY2 0/0 100.0 93.3 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00446 1178 2194 fepD 0/0 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00446 2191 3149 fepG 0/0 96.6 93.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01087 791 1362 fimB 0/0 94.9 97.5 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00215 2055 4691 fimD 0/0 100.0 97.7 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01470 39 635 fimE 0/0 100.0 98.8 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00215 1515 2048 fimF 0/0 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00215 999 1502 fimG 0/0 100.0 97.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00215 77 988 fimH 0/0 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00751 675 1214 fimI 0/0 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00190 951 2801 gspD 1/15 100.0 96.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00190 2801 4294 gspE 0/0 100.0 96.9 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00351 2897 3352 gspG 0/0 100.0 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00351 2330 2860 gspH 0/0 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00351 1962 2333 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00351 1360 1929 gspJ 0/0 100.0 96.5 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00351 386 1363 gspK 0/0 100.0 96.9 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00202 822 1244 gspM 0/0 100.0 98.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00148 768 1715 iucB 0/0 100.0 99.8 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00148 1715 3457 iucC 0/0 100.0 99.7 NP_709456 (iucC) aerobactin synthesis protein IucC [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00148 3454 4791 iucD 0/0 100.0 99.5 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00041 3577 4617 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00195 119 4237 pic 0/0 100.0 100.0 YP_006098864 (pic) Pic serine protease precursor autotransporter [Pic (VF0218)] [Escherichia coli O44:H18 042]
contig00127 3678 4431 yagV/ecpE 0/0 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00127 2111 3754 yagW/ecpD 0/0 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01325 165 752 yagZ/ecpA 0/0 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00219 2862 3821 ybtA 0/0 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00219 893 2695 ybtP 0/0 100.0 99.6 NP_405474 (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00299 1353 2657 ybtS 0/0 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00405 536 1339 ybtT 0/0 100.0 99.6 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00405 1336 2436 ybtU 0/0 100.0 99.9 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00299 2685 3965 ybtX 0/0 100.0 99.7 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
Home-KAT_009A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00903 81 1509 aslA 1/1 100.0 97.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00133 1290 2318 chuS 0/0 100.0 96.2 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00159 2421 3413 chuU 0/0 100.0 98.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00159 1654 2454 chuV 0/0 100.0 98.9 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00159 3462 4085 chuY 0/0 100.0 97.0 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00561 103 849 entA 0/0 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00314 1 1147 entC 0/0 96.5 96.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00314 1157 2767 entE 0/0 100.0 96.6 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00263 1124 2374 entS 0/0 100.0 95.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00263 164 1120 fepB 0/0 100.0 97.9 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00263 2473 3489 fepD 0/0 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01787 247 818 fimB 0/0 94.9 98.1 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00815 202 927 fimC 0/0 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00250 1280 3698 fimD 0/0 91.7 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00250 740 1273 fimF 0/0 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00250 224 727 fimG 0/0 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00815 964 1503 fimI 0/0 100.0 98.3 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00618 737 1596 gspL 1/1 99.9 94.7 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00618 200 621 gspM 0/0 99.8 92.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00123 2792 3955 iroB 0/0 100.0 98.7 NP_753168 (iroB) glucosyltransferase IroB [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00164 960 1916 iroE 0/0 100.0 99.5 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00164 1961 4138 iroN 0/0 100.0 98.9 NP_753164 (iroN) salmochelin receptor IroN [IroN (VF0230)] [Escherichia coli CFT073]
contig00286 975 1922 iucB 0/0 100.0 100.0 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00286 1922 3504 iucC 0/0 90.8 100.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00219 86 1423 iucD 0/0 100.0 100.0 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00219 1345 3624 iutA 0/0 100.0 100.0 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00097 2448 4124 kpsD 0/0 100.0 98.8 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00927 572 1348 kpsM 0/0 100.0 91.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00138 3117 4157 ompA 0/0 100.0 99.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00218 179 2701 papC 0/0 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00218 2901 3506 papD 0/0 100.0 100.0 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01112 46 1056 papG 0/0 100.0 98.8 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00386 63 296 papI 0/0 100.0 99.1 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01942 197 715 papK 0/0 96.1 99.2 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01767 196 747 papX 0/0 100.0 100.0 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00133 2367 4349 shuA 0/0 100.0 98.1 YP_405019 (shuA) outer membrane heme/hemoglobin receptor ShuA [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00351 87 840 yagV/ecpE 0/0 99.7 97.2 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00328 1356 2024 yagY/ecpB 0/0 100.0 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00328 711 1298 yagZ/ecpA 0/0 100.0 98.8 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00153 733 2535 ybtQ 0/0 100.0 99.8 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00476 963 1766 ybtT 0/0 100.0 99.8 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00153 2528 3808 ybtX 0/0 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00328 46 636 ykgK/ecpR 0/0 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-KAT_013A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00416 470 1216 entA 0/0 100.0 96.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00275 271 2511 fepA 0/0 100.0 96.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00662 493 1308 fepC 0/0 100.0 97.4 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00915 434 1346 fimH 1/1 100.0 96.9 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00325 1579 2370 gspC 0/0 95.3 95.2 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00166 211 2061 gspD 1/15 100.0 97.1 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00775 400 930 gspH 0/0 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00775 927 1298 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00649 71 931 gspL 0/0 100.0 97.1 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00132 821 2563 iucC 0/0 100.0 98.1 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00482 581 1621 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00151 2534 3067 papF 1/3 100.0 94.0 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig02450 206 439 papI 0/0 100.0 95.3 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01902 91 759 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-KAT_023A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00085 3574 4246 entA 0/0 90.1 95.2 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 2717 3574 entB 0/0 100.0 98.1 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 1 1083 entC 0/0 91.2 97.7 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00085 1093 2703 entE 0/0 100.0 95.5 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00218 681 1697 fepD 0/0 100.0 96.1 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00218 1694 2686 fepG 0/0 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01999 64 669 fimA 0/0 100.0 90.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00173 1488 2021 fimF 0/0 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00173 972 1475 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00173 50 961 fimH 0/0 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00775 398 1355 iroE 1/1 100.0 98.8 NP_753165 (iroE) esterase [Salmochelin (IA013)] [Escherichia coli CFT073]
contig00009 748 1695 iucB 0/0 100.0 99.9 NP_709455 (iucB) aerobactin synthesis protein IucB [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00009 1695 3437 iucC 0/0 100.0 99.9 NP_709456 (iucC) aerobactin synthesis protein IucC [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00009 3434 4771 iucD 0/0 100.0 99.8 NP_709457 (iucD) aerobactin synthesis protein IucC lysine 6-monooxygenase [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00009 4693 6972 iutA 0/0 100.0 99.5 NP_755498 (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig01264 158 1210 ompA 1/12 100.0 94.2 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00713 2 1627 yagW/ecpD 0/0 98.9 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01155 32 700 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig02000 115 702 yagZ/ecpA 0/0 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Home-KAT_039B
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00137 777 1769 fepG 0/0 100 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
Hosp-BWE_048
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00952 305 1030 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 1082 1615 fimF 0/0 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00027 566 1069 fimG 0/0 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00299 445 1782 iucD 0/0 100.0 99.9 NP_709457 (iucD) aerobactin synthesis protein IucC lysine 6-monooxygenase [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00373 221 974 yagV/ecpE 0/0 99.7 97.1 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00372 510 1790 ybtX 0/0 100.0 99.4 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
Hosp-BWE_054
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00379 2508 3936 aslA 1/1 100.0 98.2 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00262 3105 5051 chuA 0/0 100.0 99.5 NP_756170 (chuA) Outer membrane heme/hemoglobin receptor ChuA [Chu (VF0227)] [Escherichia coli CFT073]
contig00262 2028 3056 chuS 0/0 100.0 99.0 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00643 545 1537 chuT 0/0 100.0 99.8 NP_756175 (chuT) periplasmic heme-binding protein ChuT [Chu (VF0227)] [Escherichia coli CFT073]
contig00193 3614 4606 chuU 0/0 100.0 99.2 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00193 2847 3647 chuV 0/0 100.0 99.8 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00193 5278 5772 chuX 0/0 100.0 100.0 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00193 4655 5278 chuY 0/0 100.0 98.4 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig00720 382 609 daaF 0/0 100.0 100.0 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig00722 1706 2149 draD 0/0 100.0 99.8 AAK16478 (draD) DraD periplasmic protein [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00722 408 967 draE2 1/1 99.6 99.6 AAB65153 (draE2) Dr-II structural adhesin precursor [Afa/Dr family (VF0212)] [Escherichia coli EC7372]
contig00722 1154 1327 draP 0/0 100.0 99.4 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00076 8289 9035 entA 0/0 100.0 98.1 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00512 1009 2619 entE 0/0 100.0 99.1 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00393 1233 2483 entS 0/0 100.0 98.2 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00690 127 2367 fepA 0/0 100.0 98.8 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00393 273 1229 fepB 0/0 100.0 99.7 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00639 1325 2140 fepC 0/0 100.0 99.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00393 2582 3598 fepD 0/0 100.0 97.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00149 6124 6728 fimA 1/1 99.8 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00655 1007 1609 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00149 4758 5483 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00149 2055 4691 fimD 0/0 100.0 98.9 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00149 1515 2048 fimF 0/0 100.0 99.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00149 999 1502 fimG 0/0 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00149 77 988 fimH 0/0 100.0 97.6 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00149 5520 6059 fimI 0/0 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00668 710 2519 gspD 1/15 97.8 96.2 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00265 1233 2432 gspF 0/0 100.0 94.2 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00265 2473 2928 gspG 0/0 100.0 95.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00265 2965 3495 gspH 0/0 100.0 96.6 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00265 3492 3863 gspI 0/0 100.0 94.6 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00265 3896 4465 gspJ 0/0 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00675 551 1411 gspL 0/0 100.0 93.3 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00675 1527 1936 gspM 0/0 96.9 93.4 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00100 4056 5732 kpsD 0/0 100.0 99.5 AAA21682 (kpsD) KpsD [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00792 431 1207 kpsM 0/0 100.0 91.1 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00036 1771 2823 ompA 1/12 100.0 95.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig01432 261 574 papB 1/1 99.7 98.4 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01348 282 515 papI 0/0 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01080 254 805 papX 0/0 100.0 97.6 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00111 6081 7219 senB 0/0 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00282 2077 2830 yagV/ecpE 0/0 99.7 98.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00282 510 2153 yagW/ecpD 0/0 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00132 4797 5465 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00132 4153 4740 yagZ/ecpA 0/0 100.0 98.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01009 336 1295 ybtA 0/0 100.0 99.5 NP_405473 (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00225 3250 5052 ybtQ 0/0 100.0 99.6 NP_405475 (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00225 645 1949 ybtS 0/0 100.0 99.8 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00329 3381 4184 ybtT 0/0 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00329 2284 3384 ybtU 0/0 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00225 1977 3257 ybtX 0/0 100.0 99.5 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00132 3488 4078 ykgK/ecpR 0/0 100.0 99.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-BWE_076
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00009 4506 4622 astA 0/0 100.0 99.1 BAA94855 (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042]
contig00742 341 1087 entA 0/0 100.0 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00542 3 1304 espX1 0/0 91.6 93.0 NP_285716 (espX1) Type III secretion system effector EspX1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig01182 1 951 fepB 0/0 99.4 97.5 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00313 996 1598 fimB 0/0 100.0 97.7 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00126 167 700 fimF 0/0 100.0 96.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00814 285 1196 fimH 0/0 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00102 1 1254 ybtS 0/0 96.1 99.7 NP_405477 (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00102 1282 2527 ybtX 0/0 97.3 99.4 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
Hosp-BWE_106
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00076 1638 2420 chuV 0/0 97.8 98.2 NP_756180 (chuV) ATP-binding hydrophilic protein ChuV [Chu (VF0227)] [Escherichia coli CFT073]
contig00441 204 1385 fes 0/0 98.2 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00324 851 1456 fimA 0/0 100.0 92.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01983 13 615 fimB 0/0 100.0 99.5 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01193 12 515 fimG 0/0 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00324 247 786 fimI 0/0 100.0 99.4 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01866 1 549 gspJ 0/0 96.3 94.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig03019 2 423 gspM 0/0 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 1 1747 iucA 0/0 97.7 94.1 NP_755502 (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00002 1748 2695 iucB 0/0 100.0 95.6 NP_755501 (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00002 2695 4437 iucC 0/0 100.0 96.0 NP_755500 (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00724 158 1134 ompA 1/12 92.7 95.0 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00436 157 1149 shuT 0/0 100.0 98.1 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00382 176 929 yagV/ecpE 0/0 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-HIM_031
Contig Start End Gene Gaps Coverage Identity Accession Product
contig01444 115 861 entA 0/0 100 95.5 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig02230 18 614 fimE 0/0 100 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00717 912 1445 fimF 0/0 100 98.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00717 396 899 fimG 0/0 100 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00647 417 956 fimI 0/0 100 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00642 663 1493 gspC 0/0 100 95.1 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00300 1064 1519 gspG 0/0 100 95.8 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00300 1556 2086 gspH 0/0 100 96.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01153 393 962 gspJ 0/0 100 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00613 436 858 gspM 0/0 100 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00232 558 1226 yagY/ecpB 0/0 100 98.2 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01676 186 776 ykgK/ecpR 0/0 100 97.5 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-HIM_045
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00822 226 1654 aslA 1/1 100.0 93.6 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig01052 243 1430 entC 0/0 100.0 97.9 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01015 1 1505 entE 0/0 93.4 95.3 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00627 125 2365 fepA 0/0 100.0 96.7 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01175 235 1191 fepB 0/0 100.0 97.4 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00619 1318 2133 fepC 0/0 100.0 97.2 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00619 329 1321 fepG 0/0 100.0 94.1 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00328 1 1191 fes 0/0 99.0 96.6 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig01253 428 1033 fimA 0/0 100.0 90.8 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01421 252 854 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00382 2520 3245 fimC 0/0 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00382 1 2453 fimD 0/0 93.0 98.2 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01386 124 720 fimE 0/0 100.0 99.0 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00729 1488 2021 fimF 0/0 100.0 97.4 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00729 972 1475 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00729 50 961 fimH 0/0 100.0 97.4 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00629 1015 2055 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
Hosp-HIM_048
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00505 1198 1802 fimA 1/1 99.8 91.1 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00787 864 1466 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01204 215 940 fimC 0/0 100.0 98.6 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00089 1642 4077 fimD 0/0 92.4 98.8 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00505 178 774 fimE 0/0 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00089 1101 1634 fimF 0/0 100.0 97.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00089 585 1088 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00131 1166 2659 gspE 0/0 100.0 95.6 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00439 142 1119 gspK 0/0 100.0 96.9 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01240 716 1137 gspM 0/0 99.8 92.9 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00252 1 2066 hlyB 0/0 97.3 99.5 NP_755448 (hlyB) Hemolysin B [Hemolysin (VF0225)] [Escherichia coli CFT073]
contig00637 468 1805 iucD 0/0 100.0 100.0 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00668 295 1071 kpsM 0/0 100.0 95.2 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00306 15 1067 ompA 1/12 100.0 94.3 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig02167 255 567 papB 0/0 99.4 99.7 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 644 3166 papC 0/0 100.0 99.8 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 3366 3971 papD 0/0 100.0 100.0 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 5734 6264 papF 0/0 100.0 99.2 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 6308 7318 papG 0/0 100.0 99.4 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 10 597 papH 0/0 100.0 98.6 NP_755466 (papH) P pilus termination subunit PapH [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 4008 4589 papJ 0/0 100.0 98.3 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 4596 5135 papK 0/0 100.0 99.4 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig01881 196 747 papX 0/0 100.0 100.0 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00027 692 4591 sat 0/0 100.0 100.0 NP_755494 (sat) Aecreted auto transpoter toxin [Sat (VF0231)] [Escherichia coli CFT073]
contig00018 4535 5673 senB 0/0 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig01241 268 1021 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00046 3537 4124 yagZ/ecpA 0/0 100.0 99.3 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01487 1 1023 ybtU 0/0 92.9 99.4 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00412 1061 2269 ybtX 0/0 94.4 97.4 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00046 2872 3462 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-HIM_068
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00394 1571 2317 entA 0/0 100.0 95.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00394 714 1571 entB 0/0 100.0 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00534 254 1441 entC 0/0 100.0 97.5 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 3826 7679 entF 0/0 99.3 95.6 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 11969 13219 entS 0/0 100.0 95.5 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00035 5891 7759 espL1 2/30 98.4 95.3 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00046 12749 14041 espX5 0/0 100.0 95.5 NP_290699 (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00059 1 2163 fepA 0/0 96.5 97.1 NP_752600 (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 13223 14179 fepB 0/0 100.0 97.3 NP_752610 (fepB) ferrienterobactin ABC transporter periplasmic binding protein [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 9053 9868 fepC 0/0 100.0 97.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 10854 11870 fepD 0/0 100.0 95.8 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 9865 10857 fepG 0/0 100.0 94.8 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00059 2406 3608 fes 0/0 100.0 96.7 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00348 3818 4422 fimA 1/1 99.8 90.6 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00584 1002 1604 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00348 2452 3177 fimC 0/0 100.0 98.5 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00348 1 2385 fimD 0/0 90.4 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00752 15 611 fimE 0/0 100.0 99.2 NP_757240 (fimE) Type 1 fimbriae Regulatory protein fimE [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00535 1500 2033 fimF 0/0 100.0 98.1 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00535 984 1487 fimG 0/0 100.0 97.8 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00535 62 973 fimH 0/0 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00348 3214 3753 fimI 0/0 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00095 9605 10435 gspC 0/0 100.0 95.0 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 7515 9365 gspD 1/15 100.0 97.0 YP_404600 (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 6022 7515 gspE 0/0 100.0 96.0 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 4823 6022 gspF 0/0 100.0 96.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 4327 4782 gspG 0/0 100.0 96.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 3760 4290 gspH 0/0 100.0 95.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 3392 3763 gspI 0/0 100.0 94.1 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 2790 3359 gspJ 0/0 100.0 97.2 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 1816 2793 gspK 0/0 100.0 97.3 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 641 1501 gspL 0/0 100.0 97.3 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00095 103 525 gspM 0/0 100.0 97.2 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00050 1576 2616 ompA 0/0 100.0 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00262 2424 3177 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00262 857 2500 yagW/ecpD 0/0 100.0 98.7 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00145 1290 1958 yagY/ecpB 0/0 100.0 98.5 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00145 2016 2599 yagZ/ecpA 0/0 99.3 99.1 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00145 2677 3267 ykgK/ecpR 0/0 100.0 97.6 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-HIM_071A
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00768 67 1494 aslA 2/2 99.9 96.3 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00126 2670 3662 chuU 0/0 100.0 99.2 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00126 154 1491 chuW 0/0 100.0 98.6 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00126 1504 1998 chuX 0/0 100.0 97.4 NP_756177 (chuX) putative heme-binding protein ChuX [Chu (VF0227)] [Escherichia coli CFT073]
contig00126 1998 2621 chuY 0/0 100.0 98.6 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig01198 123 1277 entC 0/0 97.2 97.4 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00471 1 1583 entE 0/0 98.3 98.3 NP_752612 (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00553 834 1403 espY2 0/0 100.0 94.2 NP_285765 (espY2) Type III secretion system effector EspY2 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00181 793 1608 fepC 0/0 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00181 1605 2597 fepG 0/0 100.0 94.5 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00917 258 1460 fes 0/0 100.0 97.4 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00355 1174 2588 gspE 0/0 94.7 94.3 YP_404601 (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00288 1655 2830 gspF 0/0 98.0 94.3 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00288 1159 1614 gspG 0/0 100.0 94.5 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00288 592 1122 gspH 0/0 100.0 94.0 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00288 224 595 gspI 0/0 100.0 91.9 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01201 181 1158 gspK 0/0 100.0 96.1 YP_404607 (gspK) general secretion pathway protein K [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00641 110 970 gspL 0/0 100.0 94.9 YP_404608 (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00641 1086 1507 gspM 0/0 99.8 93.6 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00472 1 2084 iutA 0/0 94.9 99.9 NP_709458 (iutA) aerobactin receptor IutA [Aerobactin (VF0123)] [Shigella flexneri 2a str. 301]
contig00945 323 1099 kpsM 0/0 100.0 99.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig00011 260 2782 papC 0/0 100.0 99.7 NP_755465 (papC) usher protein PapC [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 2982 3587 papD 0/0 100.0 99.7 NP_755464 (papD) chaperone protein PapD [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 4760 5299 papE 2/6 99.4 93.5 NP_755460 (papE) P pilus minor subunit PapE [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 5344 5877 papF 1/3 100.0 94.0 NP_755459 (papF) P pilus minor subunit PapF [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 5921 6931 papG 0/0 100.0 99.0 NP_755458 (papG) P pilus tip adhesin PapG [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 3624 4205 papJ 0/0 100.0 97.9 NP_755463 (papJ) P pilus assembly protein PapJ [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00011 4212 4751 papK 0/0 100.0 99.3 NP_755461 (papK) P pilus minor subunit PapK [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00979 355 906 papX 0/0 100.0 97.8 NP_755457 (papX) PapX protein regulates flagellum synthesis to repress motility [P fimbriae (CVF425)] [Escherichia coli CFT073]
contig00127 2331 3469 senB 0/0 99.9 99.7 YP_406304 (senB) enterotoxin [ShET2 (VF0258)] [Shigella flexneri 2a str. 301]
contig00231 1338 2006 yagY/ecpB 0/0 100.0 98.8 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00231 693 1280 yagZ/ecpA 0/0 100.0 99.2 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00040 4148 4951 ybtT 0/0 100.0 99.5 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00040 3051 4151 ybtU 0/0 100.0 99.6 NP_405470 (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00682 410 1690 ybtX 0/0 100.0 99.6 NP_405476 (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00231 28 618 ykgK/ecpR 0/0 100.0 99.7 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-HIM_82
Contig Start End Gene Gaps Coverage Identity Accession Product
contig02589 186 374 afaF-VII 0/0 100 98.4 AAK16195 (afaF-VII) AfaF-VII [Afimbrial adhesin AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89]
contig00475 115 861 entA 0/0 100 95.7 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01584 342 875 fimF 0/0 100 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00132 1032 1487 gspG 0/0 100 95.0 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00132 1524 2054 gspH 0/0 100 95.3 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00132 2051 2422 gspI 0/0 100 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00132 2455 3024 gspJ 0/0 100 96.7 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00387 514 1851 iucD 0/0 100 100.0 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00303 537 1577 ompA 0/0 100 98.1 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig01105 853 1122 stx1B 0/0 100 100.0 NP_288672 (stx1B) shiga-like toxin 1 subunit B encoded within prophage CP-933V [Stx (VF0206)] [Escherichia coli O157:H7 str. EDL933]
Hosp-KAT_009
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00437 285 1313 chuS 0/0 100.0 96.9 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00284 219 995 eltA 0/0 100.0 98.8 AAA24685 (eltA) heat-labile enterotoxin A prepeptide (from human) [Heat-labile toxin (LT) (VF0210)] [Escherichia coli]
contig00284 992 1366 eltB 0/0 100.0 99.2 AAA98064 (eltB) enterotoxin subunit B (from human) [Heat-labile toxin (LT) (VF0210)] [Escherichia coli]
contig00436 1605 2291 entA 0/0 92.0 94.0 NP_752614 (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00436 748 1603 entB 0/0 99.8 95.4 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00979 57 1244 entC 0/0 100.0 95.8 NP_752611 (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00006 1 4169 fdeC 1/3 98.1 92.0 YP_002390132 (fdeC) adhesin FdeC [FdeC (VF0506)] [Escherichia coli O45:K1:H7 str. S88]
contig00459 1112 1927 fepC 0/0 100.0 96.1 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00478 632 1648 fepD 0/0 100.0 96.5 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00937 369 1486 fes 0/0 92.9 96.0 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig02014 188 732 fimB 0/0 90.4 96.9 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01335 299 1024 fimC 0/0 100.0 96.7 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01457 219 752 fimF 0/0 100.0 96.8 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00681 332 1162 gspC 0/0 100.0 94.6 YP_404599 (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00922 30 560 gspH 0/0 100.0 94.5 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00922 557 928 gspI 0/0 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00922 961 1500 gspJ 0/0 94.7 94.3 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01426 142 560 gspM 0/0 99.0 93.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00240 1784 2824 ompA 0/0 100.0 98.8 AAF37887 (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218]
contig00735 400 1392 shuT 0/0 100.0 98.4 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig01417 305 1047 shuV 0/0 96.4 98.9 YP_405013 (shuV) ATP-binding component of hemin transport system [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig01321 305 973 yagY/ecpB 0/0 100.0 97.8 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-KAT_013
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00342 678 2106 aslA 1/1 100.0 97.3 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00416 998 1813 fepC 0/0 100.0 96.7 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig01042 156 1285 fes 0/0 93.9 96.5 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig00077 1497 2030 fimF 0/0 100.0 97.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00077 981 1484 fimG 0/0 100.0 98.0 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00077 59 970 fimH 0/0 100.0 97.3 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00227 331 1530 gspF 0/0 100.0 94.0 YP_404602 (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00227 1571 2026 gspG 0/0 100.0 96.3 YP_404603 (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00227 2063 2593 gspH 0/0 100.0 95.7 YP_404604 (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00002 6001 6754 yagV/ecpE 0/0 99.7 97.0 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 4434 6077 yagW/ecpD 0/0 100.0 99.1 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 1919 4444 yagX/ecpC 0/0 100.0 99.0 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 1225 1893 yagY/ecpB 0/0 100.0 99.0 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00002 584 1167 yagZ/ecpA 0/0 99.3 99.1 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-KAT_023
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00843 1 1365 aslA 1/1 95.5 97.4 AAG10151 (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218]
contig00283 1046 2074 chuS 0/0 100.0 96.2 NP_756169 (chuS) heme oxygenase ChuS [Chu (VF0227)] [Escherichia coli CFT073]
contig00065 3431 4423 chuU 0/0 100.0 98.6 NP_756179 (chuU) heme permease protein ChuU [Chu (VF0227)] [Escherichia coli CFT073]
contig00065 915 2252 chuW 0/0 100.0 96.7 NP_756176 (chuW) Putative oxygen independent coproporphyrinogen III oxidase [Chu (VF0227)] [Escherichia coli CFT073]
contig00065 2759 3382 chuY 0/0 100.0 97.0 NP_756178 (chuY) ChuY [Chu (VF0227)] [Escherichia coli CFT073]
contig01490 509 736 daaF 0/0 100.0 98.7 AAA23662 (daaF) DaaF protein [F1845 fimbrial adhesin (AI016)] [Escherichia coli str. C1845]
contig02616 190 495 draA 0/0 100.0 100.0 AAK16475 (draA) cytoplamic protein DraA [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00872 709 1453 draB 1/1 100.0 99.9 AAK16476 (draB) chaperone protein DraB [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig01310 299 472 draP 0/0 100.0 98.3 AAK16479 (draP) DraP [Dr adhesins (VF0223)] [Escherichia coli O75:K5:H- str. IH11128]
contig00133 1 3563 entF 0/0 91.8 95.7 NP_752604 (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00156 815 2065 entS 0/0 100.0 95.8 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00633 546 1361 fepC 0/0 100.0 96.8 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00156 2164 3180 fepD 0/0 100.0 96.2 NP_752608 (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00627 1 559 fimA 0/0 92.2 90.2 NP_757241 (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig01719 254 856 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00627 1200 1900 fimC 0/0 96.6 98.9 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 2049 4685 fimD 0/0 100.0 98.5 NP_757244 (fimD) Outer membrane usher protein fimD precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 1509 2042 fimF 0/0 100.0 96.6 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 993 1496 fimG 0/0 100.0 98.4 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00056 71 982 fimH 0/0 100.0 97.5 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00627 624 1163 fimI 0/0 100.0 98.5 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00983 619 990 gspI 0/0 100.0 92.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00983 17 586 gspJ 0/0 100.0 94.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig02492 200 588 gspM 0/0 92.0 93.3 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00060 905 2226 iucD 1/1 98.8 96.3 NP_755499 (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073]
contig00931 540 1316 kpsM 0/0 100.0 94.7 AAA24046 (kpsM) KpsM [K1 capsule (VF0239)] [Escherichia coli O18:K1:H7 str. RS218]
contig01543 747 1031 papB 1/1 90.5 98.2 (papB) regulatory protein PapB [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig02677 222 455 papI 0/0 100.0 94.9 NP_755468 (papI) regulatory protein PapI [P fimbriae (VF0220)] [Escherichia coli CFT073]
contig00065 1 895 shuT 0/0 90.1 98.2 YP_405017 (shuT) periplasmic binding protein ShuT [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00065 2265 2759 shuX 0/0 100.0 96.4 YP_405016 (shuX) shu locus protein ShuX [Shu (VF0256)] [Shigella dysenteriae Sd197]
contig00025 3022 3775 yagV/ecpE 0/0 99.7 97.2 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00025 1455 3098 yagW/ecpD 0/0 100.0 99.0 NP_286007 (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00244 2114 2782 yagY/ecpB 0/0 100.0 98.4 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00244 1469 2056 yagZ/ecpA 0/0 100.0 98.8 NP_286010 (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00189 1388 2965 ybtE 0/0 100.0 99.9 NP_405468 (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00189 581 1384 ybtT 0/0 100.0 99.2 NP_405469 (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92]
contig00244 804 1394 ykgK/ecpR 0/0 100.0 99.0 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
Hosp-KAT_039
Contig Start End Gene Gaps Coverage Identity Accession Product
contig00974 316 1173 entB 0/0 100.0 97.8 NP_752613 (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00753 97 1347 entS 0/0 100.0 95.6 NP_752609 (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073]
contig00093 1084 2982 espL1 0/0 100.0 97.6 NP_288154 (espL1) Type III secretion system effector espL1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933]
contig00468 1485 2300 fepC 0/0 100.0 97.3 NP_752606 (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00468 496 1488 fepG 0/0 100.0 94.0 NP_752607 (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073]
contig00550 931 2133 fes 0/0 100.0 96.8 NP_752602 (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073]
contig01098 744 1346 fimB 0/0 100.0 97.8 NP_757239 (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00242 1704 2429 fimC 0/0 100.0 98.3 NP_757243 (fimC) Chaperone protein fimC precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 3858 4391 fimF 0/0 100.0 97.9 NP_757245 (fimF) FimF protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 3342 3845 fimG 0/0 100.0 98.2 NP_757247 (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00060 2420 3331 fimH 0/0 100.0 97.8 NP_757248 (fimH) FimH protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00242 2466 3005 fimI 0/0 100.0 99.1 NP_757242 (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073]
contig00965 151 522 gspI 0/0 100.0 95.2 YP_404605 (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00965 555 1124 gspJ 0/0 100.0 97.4 YP_404606 (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig01628 222 644 gspM 0/0 100.0 94.1 YP_404609 (gspM) general secretion pathway protein M [T2SS (VF0333)] [Shigella dysenteriae Sd197]
contig00282 221 974 yagV/ecpE 0/0 99.7 96.8 NP_286006 (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00218 1 2322 yagX/ecpC 0/0 91.9 98.6 NP_286008 (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig01086 564 1232 yagY/ecpB 0/0 100.0 98.1 NP_286009 (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]
contig00260 2553 3143 ykgK/ecpR 0/0 100.0 97.3 NP_286011 (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933]


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Multi-Locus Sequence Typing (MLST)


Symbol Meaning
~ novel full length allele similar to match
? partial match to known allele
- allele missing


Scheme ST 1 2 3 4 5 6 7
Catt-BWE_048B ecoli - adk(-) fumC(1489?) gyrB(14) icd(16) mdh(948?) purA(8) recA(14)
Catt-BWE_054A ecoli - adk(18) fumC(1238) gyrB(764) icd(1197?) mdh(4) purA(5) recA(4)
Catt-BWE_113B ecoli - adk(6) fumC(6) gyrB(3) icd(1149?) mdh(7) purA(7) recA(6)
Catt-HIM_031B - -
Catt-HIM_045B ecoli - adk(6) fumC(-) gyrB(983?) icd(1158?) mdh(866?) purA(2) recA(779?)
Catt-HIM_048B senterica - aroC(621) dnaN(559) hemD(496?) hisD(764?) purE(617) sucA(281) thrA(695)
Catt-HIM_068A ecoli - adk(9) fumC(65) gyrB(5) icd(1249?) mdh(9) purA(13) recA(6)
Catt-HIM_073A ecoli - adk(-) fumC(1431?) gyrB(3) icd(1232?) mdh(11) purA(8) recA(6)
Catt-HIM_082A1 ecoli - adk(9) fumC(-) gyrB(5) icd(1247?) mdh(9) purA(13) recA(6)
Catt-KAT_009_A1 ecoli 10 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
Catt-KAT_013A1 ecoli - adk(1050?) fumC(19) gyrB(33) icd(1232?) mdh(11) purA(8) recA(6)
Catt-KAT_036B - -
Home-BWE_054A ecoli 2 adk(5) fumC(3) gyrB(2) icd(6) mdh(5) purA(5) recA(4)
Home-HIM_031A ecoli - adk(842?) fumC(1518?) gyrB(32) icd(16) mdh(11) purA(8) recA(14)
Home-HIM_032A ecoli - adk(10) fumC(1521?) gyrB(5) icd(364?) mdh(949?) purA(8) recA(780?)
Home-HIM_045A ecoli - adk(6) fumC(4) gyrB(14) icd(1166?) mdh(24) purA(8) recA(14)
Home-HIM_047B ecloacae - dnaA(~93) fusA(18) gyrB(~276) leuS(107) pyrG(34) rplB(110) rpoB(29)
Home-HIM_048A ecoli - adk(13) fumC(888?) gyrB(10) icd(97) mdh(17) purA(94) recA(93)
Home-HIM_068B cfreundii - aspC(171) clpX(193?) fadD(112?) mdh(172) arcA(~114) dnaG(84) lysP(-)
Home-HIM_071A ecoli - adk(351) fumC(1467?) gyrB(54) icd(54) mdh(1) purA(35) recA(151)
Home-HIM_072A senterica - aroC(~622) dnaN(559) hemD(552) hisD(765?) purE(~690) sucA(~580) thrA(695)
Home-HIM_073B ecoli - adk(27) fumC(-) gyrB(24) icd(-) mdh(26) purA(168?) recA(745?)
Home-HIM_075A ecoli - adk(1081?) fumC(579) gyrB(3) icd(16) mdh(11) purA(8) recA(6)
Home-HIM_82A ecoli - adk(10) fumC(11) gyrB(4) icd(8) mdh(949?) purA(8) recA(2)
Home-KAT_009A ecoli - adk(21) fumC(1394?) gyrB(946?) icd(6) mdh(5) purA(5) recA(725?)
Home-KAT_013A senterica - aroC(621) dnaN(559) hemD(~496) hisD(-) purE(617) sucA(281?) thrA(~633)
Home-KAT_023A ecoli 10 adk(10) fumC(11) gyrB(4) icd(8) mdh(8) purA(8) recA(2)
Home-KAT_039B ecoli - adk(-) fumC(11) gyrB(983?) icd(1250?) mdh(915?) purA(8) recA(2)
Hosp-BWE_048 ecoli - adk(10) fumC(1521?) gyrB(979?) icd(1250?) mdh(923?) purA(8) recA(776?)
Hosp-BWE_054 ecoli - adk(53) fumC(40) gyrB(945?) icd(13) mdh(36) purA(28) recA(29)
Hosp-BWE_076 ecoli - adk(670?) fumC(1487?) gyrB(983?) icd(-) mdh(923?) purA(8) recA(2)
Hosp-BWE_106 - -
Hosp-HIM_031 senterica - aroC(622?) dnaN(559) hemD(343?) hisD(~763) purE(~686) sucA(~580) thrA(~695)
Hosp-HIM_045 senterica - aroC(621) dnaN(559) hemD(496) hisD(764?) purE(617) sucA(281) thrA(~695)
Hosp-HIM_048 ecoli - adk(6) fumC(4) gyrB(983?) icd(1149?) mdh(24) purA(8) recA(14)
Hosp-HIM_068 ecoli - adk(6) fumC(23?) gyrB(15) icd(26) mdh(9) purA(8) recA(7)
Hosp-HIM_071A ecoli - adk(27) fumC(32?) gyrB(24) icd(29) mdh(944?) purA(19) recA(22)
Hosp-HIM_82 ecoli - adk(10) fumC(-) gyrB(4) icd(8) mdh(775?) purA(35) recA(766?)
Hosp-KAT_009 ecoli - adk(52) fumC(403) gyrB(76?) icd(761?) mdh(902?) purA(40) recA(278)
Hosp-KAT_013 senterica - aroC(622?) dnaN(559?) hemD(496) hisD(764?) purE(~690) sucA(281?) thrA(695?)
Hosp-KAT_023 cfreundii - aspC(69) clpX(169?) fadD(77) mdh(175?) arcA(~111) dnaG(164?) lysP(~101)
Hosp-KAT_039 ecoli - adk(6) fumC(6) gyrB(33) icd(1232?) mdh(11) purA(8) recA(2)

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Pangenome Analysis

Pangenome genes summary

Genes Description Number
Core genes (99% <= strains <= 100%) 0
Soft core genes (95% <= strains < 99%) 27
Shell genes (15% <= strains < 95%) 5645
Cloud genes (0% <= strains < 15%) 17237
Total genes (0% <= strains <= 100%) 22909

Schematic representation of genes presence (color) or absence (blank) between samples:


Pangenome tree based on presence/absence of accesory genes representation

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


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Pangenome tree based on core genome alignment representation

Rectangular (phylogram)

Circular (phylogram)

Rectangular (cladogram)

Circular (cladogram)


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